Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03621 ATGGAATCATTATTTCATAATAGAAACAAAGATAAGGTTGTAGTGATTATGGGGGCCACAGGAACTGGAAAGACCAAATTAGCCATAGATTTGGCCAAACATTTTCAACCAGCTGAAATTGTGAATTCAGATAAAATGCAAATTTATAAAGGTCTTGATATTACAACAAATAAGGTGACAGAAAAAGAGTGTGATGGGGTCCCACACCATCTTTTAGGTGTATTTGatccaaattcaaatttcaCTGCCAATGATTTTTGCTACCATGCTTGTTCAGCTATTGATTCTATTGTGGAAAAAGATGGATTACCAATTATTGCTGGTGGTTCAAATTCATATTTAGATGCTTTAGTGAATCATTGTAGTGAGTTTAGGTTAAGGTATGAATGTTGTTTTCTTTGGGTTGATGTTTTGCCGCCGGTTCTTCATTCATCGCTTCAATCGCGCGTTGATCGTATGATTGAAGCTGGTCAGTTAGATGAAGTTCGTGAATTTTTTGACCCGTTGAGTGATTATACAAAAGGGATTCGAAGAGCTATTGGGGTTCCTGAATTTCATGATTTTCTAATAGCGGAAGCAAATTCAGCTGATGAGAGAACTAAGAAGAGGCTTTTGGAAGATGCTATTGCTAGGCTCAAGATTAATAATTGCACGCTTGCGAATCGACAGGTTCAAAAGATTCGTCGATTAAATGGAATGTGGAAGAGGAGTATGTATCGTCTTGATGCCACTGAAACACACCTTAAGCGTGGTTCATATGCTAGTAAGGAGTCATGGGAGGATAATGTGCTTGCAAAAAGTCTTGTGATCCTCTACAATTTTCTTTACGGGGAAACACGAATTCGCTCTAGAAAAAAGACGGCAAGTATATCTTTTGGTGAAACACTTCTAGAGCAAATTCGTGTTTCCCCCTTAAATTCATACACTTTAATGGGAAAAAGATAA 945 0.3693 MESLFHNRNKDKVVVIMGATGTGKTKLAIDLAKHFQPAEIVNSDKMQIYKGLDITTNKVTEKECDGVPHHLLGVFDPNSNFTANDFCYHACSAIDSIVEKDGLPIIAGGSNSYLDALVNHCSEFRLRYECCFLWVDVLPPVLHSSLQSRVDRMIEAGQLDEVREFFDPLSDYTKGIRRAIGVPEFHDFLIAEANSADERTKKRLLEDAIARLKINNCTLANRQVQKIRRLNGMWKRSMYRLDATETHLKRGSYASKESWEDNVLAKSLVILYNFLYGETRIRSRKKTASISFGETLLEQIRVSPLNSYTLMGKR 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03621 314 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 139 238 - -
Tsu08g03621 314 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 6 280 - -
Tsu08g03621 314 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 125 IPR027417 -
Tsu08g03621 314 Gene3D - 10 275 IPR027417 -
Tsu08g03621 314 Pfam IPP transferase 126 229 - -
Tsu08g03621 314 Pfam IPP transferase 47 122 - -
Tsu08g03621 314 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 6 280 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03621 Tsu-Chr8 54297783 54300132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03621 127 313 C2H2 Transcription Factor Family AT2G27760 30.986 1.97e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03621 K10760 - gmx:100812928 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03621 08 54297783 54300132 Tsu08g03621 08 54297783 54300132 ECH
Tsu04g04113 04 49666536 49667468 Tsu08g03621 08 54297783 54300132 PCT