Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03615 ATGGGTATTTCCTGGAGTAGTAGCAGCAGAAGAAACAATTACATCCAAAatccaccaccacaaccaccaccacaacttccaccaccaccaccttaCTATTACCCTACAGATTCACATCCACATCCACCACCACTTCCTCCTCAACAAGGTTATAACTACCCTCCTCAAAACATAGGTTATGCAACTCAACCACCACCACAACCTCAAACTCATCCATTTTACTTCTCTAACCCTAATGCTTACACAAACTATCCCAATTCTTCTATAAATCGAATTCAATTTCATCCTTCTTACTATgttaatcaacaacaacatcaacaacatgCTTGGGGTCCACCTCATCAATCTTTTCATGCTCCTTCTTCAACAACACCACCTCCTTATGTTGATCATCAAACTGCTAAGAAGATTAGGAATAATGTTAATGTTCATAAAGATACTTTGCGTCTTGAGCTTGATCAACATAACCCTGATCACCatcttgtttcttttgtttttgatgCTGTTTATGATGGAAGCATTACTATTTTCTACTTCGCAAAGGAAGAAGATAAATGTAAATTTGTTCCACTCTTTCCGGATGCATTTGTGCCAGTCAAAGTCCCCTTTGAGAAAGGAGTTGGCAAGAAATTTGCTCAGCCTTCAGGAACAGGGATTGACTTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCTTCACCTGGAGAAGACGTCTTTCCTCTTGTAATATGCGCTGAAACGTGTTTGGAAACTCCCTCAGCAAACGAAACTCCTAAAACTCCGGATGATTCCATGCTAGAAGCATCCCCTGATTCCCCTCACATGCAAATAACTCAAGCTGTCTTGGTTAAAAGTAATGGTGATAGTGCTTTCCAGATAAAAGTAGTTAAGCAGATTCTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGCTATATGGAATAGGAAGCTCAGAAGCTGCAGGCTTTGATGACAGTGATCCTGGAAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACGGCTGTTTTACCATGTCGACATATGTGTTTGTGCAGTGAGTGTGCGAAAGCTCTGCGGCTTCAATCCAATAAATGCCCTATATGCCGTCAGCCCATTGAAGAACTTATGGAGATCAAGGTAAAGAGTGGCAATCCATGA 1164 0.3771 MGISWSSSSRRNNYIQNPPPQPPPQLPPPPPYYYPTDSHPHPPPLPPQQGYNYPPQNIGYATQPPPQPQTHPFYFSNPNAYTNYPNSSINRIQFHPSYYVNQQQHQQHAWGPPHQSFHAPSSTTPPPYVDHQTAKKIRNNVNVHKDTLRLELDQHNPDHHLVSFVFDAVYDGSITIFYFAKEEDKCKFVPLFPDAFVPVKVPFEKGVGKKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETCLETPSANETPKTPDDSMLEASPDSPHMQITQAVLVKSNGDSAFQIKVVKQILWIDGVRYELRELYGIGSSEAAGFDDSDPGKECVICMTEPKDTAVLPCRHMCLCSECAKALRLQSNKCPICRQPIEELMEIKVKSGNP 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03615 387 MobiDBLite consensus disorder prediction 109 128 - -
Tsu08g03615 387 PANTHER MAHOGUNIN 1 385 IPR045194 GO:0061630
Tsu08g03615 387 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 331 371 IPR045195 -
Tsu08g03615 387 MobiDBLite consensus disorder prediction 1 15 - -
Tsu08g03615 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 381 IPR013083 -
Tsu08g03615 387 ProSiteProfiles Zinc finger RING-type profile. 332 371 IPR001841 -
Tsu08g03615 387 MobiDBLite consensus disorder prediction 1 75 - -
Tsu08g03615 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 385 - -
Tsu08g03615 387 MobiDBLite consensus disorder prediction 252 271 - -
Tsu08g03615 387 Pfam Zinc finger, C3HC4 type (RING finger) 330 376 - -
Tsu08g03615 387 SUPERFAMILY RING/U-box 331 377 - -
Tsu08g03615 387 SMART ring_2 332 370 IPR001841 -
Tsu08g03615 387 MobiDBLite consensus disorder prediction 16 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03615 Tsu-Chr8 54135119 54140328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03615 128 386 C3H Transcription Factor Family AT3G06140 62.308 1.04e-109 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03615 - - gsj:114373285 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03615 08 54135119 54140328 Tsu08g03615 08 54135119 54140328 ECH