Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03610 ATGTCTCATATAGCTGTTGAGAGGAATAGGAGAAGACAAATGAATGAACATCTCAAAGTTTTAAGGTCTTTGACCCCTTGTTTCTATATTAAAAGGGGAGACCAGGCATCAATTATAGGAGGAGTTATAGAATTTATCAATGAATTGCACCAAGTTCTTCAAGCTTTGGAGTCTCAAAAGAGAAGGAAGAGTTTAAGCCCTAGCCCCGGTCCGAGTCCAAAAACATTGCAACCGACGTTCCATCAATTTGATATATCTTCCGGAGGAATTGGGACTAATAATGATTTCAAGGAACTAGGAGCAAGTTGCAATTCTTCAGTTGCAGATGTAGAAGTGAAAATTTCAGGACCAAATGTGATTTTGAGAGTGATTTCTCACCGAATTCCGGGTCAAGTTTCAAGGATCATAACTGTTTTAGAAAGTCTTTCATTTGAAGTTCTTCATCTTAATATAAGTAGCATGGAAGAGACTGTTCTTTACCAATTTGTAGTCAAGATAGAGTTGGGATGTCAACTAAGTTTGGAGGAACTTGCAATGGAAGTACAACAAAGCTTTTGTTCAGAAGAACCTATGAAGTTGACTGCTGTTTGA 591 0.3773 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFINELHQVLQALESQKRRKSLSPSPGPSPKTLQPTFHQFDISSGGIGTNNDFKELGASCNSSVADVEVKISGPNVILRVISHRIPGQVSRIITVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSEEPMKLTAV 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03610 196 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Tsu08g03610 196 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Tsu08g03610 196 PANTHER TRANSCRIPTION FACTOR FAMA 1 189 IPR044283 GO:0003700|GO:0010052
Tsu08g03610 196 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
Tsu08g03610 196 Gene3D - 1 64 IPR036638 GO:0046983
Tsu08g03610 196 SMART finulus 4 55 IPR011598 GO:0046983
Tsu08g03610 196 PANTHER TRANSCRIPTION FACTOR MUTE 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03610 Tsu-Chr8 54066231 54068773 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03610 1 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 65.500 3.05e-84 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g03610 HLH 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03610 - - mtr:MTR_2g022280 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03610 08 54066231 54068773 Tsu08g03610 08 54066231 54068773 ECH