LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g03609	ATGGACTGCAATAAAGAAGAGGCCTTAAGGGCCAAGAGTATTGCTGAAAAGAAAATGGAAAGCAAAGATTTCATAGGGGCTCGTACAATTGCCCTTAAGGCTCAGAAACTATATCCTGATCTGGAGAATATCGCTCAATTGCTTGTTGTTTGTGATGTGCATTGTTCTGCTGAGCAGAAATTACTGGGTAATGCTAAGGTGGTGGACTGGTATAAAGTTCTACAAGTTGATCGCAATGATAATGATGTAATAATTAAGAAACAATACAGGAAGTTTGCTCTCCAGCTTCATCCTGACAAAAACAAGTTTGCTGGTGCAGAAGCTGCATTTAAGCTGATTGGGGAAGCTCAGAGAGTTCTTTTGGATAAAGACAAACGATCATCGCTTAACATGAGCTTGAGCAGTTTTTCAATGAGCAGAACTGCCATGCCATCTCATCATCAACGGAATGTTCCCGTGAATTTTAATCCTGTGATGCAAACTAATCTCCGGCCCGTTTTCCCGAACTCAAATCCTCAGCAGCGGCAGCCAACTCAGCAGGGAGTTAACGGTGGTGTCCAGTCCCCTACATTTTGGACTATGTGCTCATTTTGTTCAGTTAAGTTTGAGTATTACAGGACAGTTTTAAATAGATCTCTTCGCTGTCAACAGTGCAATAAGCCCTTCATTGCATATGAGGTGGATCCGCAAAGTACAAAATCAGCAACCAATTCAAGTCAGAACCAGCAACCAGTTCAGCAGAACAATAAACCGAATCATGGTGCTTTTAAGTTTGGTGTTGAATCTCAAGGTGATGTCTTTGCTAAGAGGCCCAAAAAAGAATCTCATCATAAGAAAGGCTCTACTTCAAATGTCTCCGTGAAGCCAAatggaaagagaaagagaaagaatgtAGTAGAATCCAGTGAAAGTTCTATAGGCAGCACTGATTCTGAAGATGATACACTTTCAAACGACAATGGTTTTCCGGATGTTCCTACTTCTAGAGACGAGCGTCCACGGAGATCTACACGGCAAAAACACCAGGTTTCCTACAAGGAGAATGGAAGTGACAATGAACATAATGAGGAAATTGAAATGAATGATCAGAATGGTTTAGCTGCTGGTCGGAACGATGGTCAGAAAGAGGCGAAGCAGAAGCAAAAAATTTATTCTGAAGAGAGCTCAGGGAATATAGATGTGAAAATTAAGGAGGTGGGAGAAAAAGAAACAGTGGGAAGCTCAAAGATAGACGAAGCTTCAGAGCAATCGGACTCCAAATCGTCAGATCATTTAGATGATTTTGTTTATCCTGATCCAGAGTTCAGTGACTTTGATAAGGACAAAAAAGAGGAATGTTTCGCTTCCGGGCAGATTTGGGCTGCTTATGATGATATAGATGCTATGCCTAGATTCTAtgctataataaaaaaagttttttctCCTGGATTTAAGTTGCAGATAACTTGGCTTGAGGCAGATCCAAATGACAAAGATGAATGCAAGTGGATTGAGGAGAAACTGCCAAATGCTTGTGGGAAGTATAAACTTGGTACGACTGTAACCACTAAAAATCAACAAATGTTCTCTCATCAGACTTTATGTGAAAAGTTTGACCGCACTACTTTTAAAGTGTATCCTAGAAAAGGAGAAACTTGGGCTCTTTTTAAGAATTGGGATATTAAATGGTATATGGATGCAAAATCTCATCAGAagtatgattttgaatttgttgagATCTTGTCGGATTATGTTGAAGGCGCGGGAGTAATTGTTGCATACTTGGCTAAGTTGAAAGGTTTTGTGAGCCTCTACTCTCGAGTTACAGAGGGACGTAATTGCTCGTTTCAGATTCCACCAGCTGAGTTGTTCAGATTCTCTCACAGGGTTCCATCTTTTAAAATGACTGGTAAGGAAAGAGCAGGTGTTCCTGTAGGATCTTATGAACTTGATCCTATATCCTTGCCGATGGAAGAGGTTGCTGCTACTGATGACGTGGAAGTAATGGTTGAATCTACTGCCAAGGTTAATTTGGATAGAAGTAATTTggtagagaagaagaaggatccCGTTGATCATATTGATGATGTCAGTGCTCCATCAGCTTCGGCCGCAGATTCTTTTGAAGTTCCAGACCCTTCGTTCTACCAATTTGATGATGTGAGGTCCCACGAAAAGTTTGAGGCTGGCCAGATTTGGGCATTTTATGGCGATGAGGACGAACTTCCAAGATATTATGGTCAGATTAAAGAGGTTAGGAGGATTGACTCAACAATTGAGTTGCAAGTAATTTATCTTACTGACTGCTGGCTATCTAACAAAGTTGTTAGATGGGATGATAAGGATATGATCATTTCCTGTGGAAGATTTAAAGTCAAGCCAAATGGTAAGCTCTGTACTTACAATAACACCAATTCTGTTTCACATCAGGTGCATGCAAATGTCGTTGGAAGAAACAAGAACTATGAAATTTTTCCTCGGAAGGGTGAAATTTGGGCATTGTATAGGGGATGGACGACTAAACTCAAACGTTCTGATTTAAAAAACTGTGAGTATGACATAGTGGAAGTTACTGAAGACGGTTATTCGTGGACAGATGTTTTATTTCTGGAGAAGGTAAGTGGTTACAGTTCAGTTTTTAAGTGCAAATTAAGCAACGCAGGAAAAAAGATGAACATGACGATCGATAGGACCGAGCTGCTCAGGTTCTCCCACCAAATACCTGCTTTCAAACTGACAGCAGAACATGACAGCAATCTGAAAGGCTTCTGGGAACTTGATCCGAGTGCAATGCCAGTCCATTATCTTAGATAG	2793	0.3956	MDCNKEEALRAKSIAEKKMESKDFIGARTIALKAQKLYPDLENIAQLLVVCDVHCSAEQKLLGNAKVVDWYKVLQVDRNDNDVIIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRVLLDKDKRSSLNMSLSSFSMSRTAMPSHHQRNVPVNFNPVMQTNLRPVFPNSNPQQRQPTQQGVNGGVQSPTFWTMCSFCSVKFEYYRTVLNRSLRCQQCNKPFIAYEVDPQSTKSATNSSQNQQPVQQNNKPNHGAFKFGVESQGDVFAKRPKKESHHKKGSTSNVSVKPNGKRKRKNVVESSESSIGSTDSEDDTLSNDNGFPDVPTSRDERPRRSTRQKHQVSYKENGSDNEHNEEIEMNDQNGLAAGRNDGQKEAKQKQKIYSEESSGNIDVKIKEVGEKETVGSSKIDEASEQSDSKSSDHLDDFVYPDPEFSDFDKDKKEECFASGQIWAAYDDIDAMPRFYAIIKKVFSPGFKLQITWLEADPNDKDECKWIEEKLPNACGKYKLGTTVTTKNQQMFSHQTLCEKFDRTTFKVYPRKGETWALFKNWDIKWYMDAKSHQKYDFEFVEILSDYVEGAGVIVAYLAKLKGFVSLYSRVTEGRNCSFQIPPAELFRFSHRVPSFKMTGKERAGVPVGSYELDPISLPMEEVAATDDVEVMVESTAKVNLDRSNLVEKKKDPVDHIDDVSAPSASAADSFEVPDPSFYQFDDVRSHEKFEAGQIWAFYGDEDELPRYYGQIKEVRRIDSTIELQVIYLTDCWLSNKVVRWDDKDMIISCGRFKVKPNGKLCTYNNTNSVSHQVHANVVGRNKNYEIFPRKGEIWALYRGWTTKLKRSDLKNCEYDIVEVTEDGYSWTDVLFLEKVSGYSSVFKCKLSNAGKKMNMTIDRTELLRFSHQIPAFKLTAEHDSNLKGFWELDPSAMPVHYLR	930

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g03609	930	ProSiteProfiles	dnaJ domain profile.	69	133	IPR001623	-
	Tsu08g03609	930	Gene3D	DnaJ domain	67	178	IPR036869	-
	Tsu08g03609	930	MobiDBLite	consensus disorder prediction	164	185	-	-
	Tsu08g03609	930	MobiDBLite	consensus disorder prediction	325	360	-	-
	Tsu08g03609	930	SMART	dnaj_3	68	125	IPR001623	-
	Tsu08g03609	930	MobiDBLite	consensus disorder prediction	391	428	-	-
	Tsu08g03609	930	MobiDBLite	consensus disorder prediction	301	324	-	-
	Tsu08g03609	930	PANTHER	-	1	929	-	-
	Tsu08g03609	930	MobiDBLite	consensus disorder prediction	229	253	-	-
	Tsu08g03609	930	Pfam	DnaJ domain	69	128	IPR001623	-
	Tsu08g03609	930	MobiDBLite	consensus disorder prediction	229	428	-	-
	Tsu08g03609	930	CDD	DnaJ	69	122	IPR001623	-
	Tsu08g03609	930	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN	1	929	-	-
	Tsu08g03609	930	SUPERFAMILY	Chaperone J-domain	65	136	IPR036869	-
	Tsu08g03609	930	Pfam	Domain of unknown function (DUF3444)	699	908	IPR024593	-
	Tsu08g03609	930	Pfam	Domain of unknown function (DUF3444)	428	632	IPR024593	-
	Tsu08g03609	930	PRINTS	DnaJ domain signature	71	89	IPR001623	-
	Tsu08g03609	930	PRINTS	DnaJ domain signature	105	125	IPR001623	-
	Tsu08g03609	930	PRINTS	DnaJ domain signature	89	104	IPR001623	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g03609	Tsu-Chr8	54055318	54060087	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g03609	4	230	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	32.489	1.45e-25	107

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g03609	-		-	cam:101500991	1325.07