Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03595 ATGGATCAAAAGAATCAAGAGAAACCTAAAGAAAAAGGGAAGGATATTCCAACACAAACTAATAACGAAAACCAAAATAAACCAAACCAAATAGCGCCACTATCTCGTCCTTTAATTCATACCGCAGGTACTTCGGCCTTTTCATCCTACCTGAGTAGAGAGCAAatccaacaacaaaaacaacaaacattGCAGGAAAAACTCGACACTTTTTGGGCAAATCAAAACCGTGAAATCGAGGAGACAGTCGATTTCAAACCTAATTGTTTGCCTTTGGCAAGGATTAGGAAAATTATGAAAGCGGAGGAGAAAGTGAGTATGATATCATCTGAGACACTTGTTCTATTTTCTAAGGCATGTGAAATGTTTATTACGGATTTGACAATGCAGTCATGGGATATCGTTGAGgcgaacaaaagaaaaacacttCAAAAGAGTGATATTGCATCTGCAATATCAAGGAATGATATGTTTGATTTTCTAGTTGATATTGTTCCAAGGGAAAACACATTGGAGCATAACATAAGAGGAAGTGTTCCATTTACAAATGTTCCTTATTATTATGTTCCTGTTCCTGTGCCTATGCCATCTCAGGTTGCTGCAGGTCCATCATATGGTCCTCCAAGAATGCTTATGGGAAGATCTCTTATTGATCAACCTCAATACAACAGACAGCTACATCATCCTTTTGCAACTCAAGTGTTGCCAATCCCAAAACAAGAAGATGAACATTCTTCTAATTTGCCAGATTCAGAAGATTGA 762 0.357 MDQKNQEKPKEKGKDIPTQTNNENQNKPNQIAPLSRPLIHTAGTSAFSSYLSREQIQQQKQQTLQEKLDTFWANQNREIEETVDFKPNCLPLARIRKIMKAEEKVSMISSETLVLFSKACEMFITDLTMQSWDIVEANKRKTLQKSDIASAISRNDMFDFLVDIVPRENTLEHNIRGSVPFTNVPYYYVPVPVPMPSQVAAGPSYGPPRMLMGRSLIDQPQYNRQLHHPFATQVLPIPKQEDEHSSNLPDSED 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03595 253 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 47 245 - -
Tsu08g03595 253 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 90 152 IPR003958 -
Tsu08g03595 253 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 47 245 - -
Tsu08g03595 253 MobiDBLite consensus disorder prediction 1 33 - -
Tsu08g03595 253 MobiDBLite consensus disorder prediction 1 17 - -
Tsu08g03595 253 SUPERFAMILY Histone-fold 63 161 IPR009072 GO:0046982
Tsu08g03595 253 MobiDBLite consensus disorder prediction 18 32 - -
Tsu08g03595 253 Gene3D Histone, subunit A 51 167 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03595 Tsu-Chr8 53941972 53942733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03595 70 220 CCAAT-HAP5 Transcription Factor Family AT1G54830 50.000 1.12e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tsu08g03595 CBFD_NFYB_HMF 2.3e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03595 K08066 - nnu:104596441 178.718