Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03587 ATGGCTAATTTCACTTCcttctcttcttcatcttcaactcCACCACCACCTTCTTTCTCATACATTTCAgctccatcttcttcttcaactttcGATGATGACTCTTTTGAAGATTCCTGCAGTATATGCTTAGAATCCTTCACTCTTCATGACCCATCTACTGTTACCTGTTGCAAACATGAATATCACCTGCATTGCATTCTTGAATGGTCACAGAGAAGCAAAGAATGCCCAATATGTTGGCAATCACTTTCTTTGAAAGACCCTGCTAGCCAAGAGCTTCTGATTGCTGTGGATGCTGAAAAAAGCGTAAGATCAAGAAACAATTATTCATCTTCACACACTAATTCACGTGTCCCCTTTGGATATTCTAATGATGACCATGATGATTCTTGCTCAGATGACAATGATGTTGATGAGGAAATTATGCAGCACCTATATGCCGCTGCAAGAAGAGCCCGTTTTGTCCAGAGACAGAAAAGACAAGGATCGTCCGGAGCAGGTCCATCAGAGATGCTTGTTTTCAACTCTTCTTCACATGTATCTGGGGTGCAACCGACTCTTACAACTTCACCAGATGACAGTAGTTCACTGACCTCTGGTCTACCATCGATTTTCCACAATCATCCTCAGGTTGCAAGAAACATTAGTCGTCCCGAGGCTGATGTCCCATACCGACCTAGAGTTCTTTACAGTCCGTCACCACCTCAGGATGAGAGGAAACTAAACACTTCTGAGATGTTCTCCTTTCCCGAGTCCATCAAATCCAAATTTTCTGCTGCTTCTGCCAGATATAAGGAATCAATATCTAAAAGTACCCGTGGCCTTAAAGAGAAGTTACTTGCTCGTAATGTGACAGTGAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATAGCTGGTGTTTCACGTATGATTGAACGCCTTGATCTTGCCTCAAAAAGATCGACTTCTCCTCTCATTCCGGTCCGTAATGAGGGAACTTCAGGCTTTTCCGAAGGGAGGTTTGTTCTAGAGAAAGGCATTGAGCATGCTCCAAATGAAGCAAGTGGAGGTGTTGATCGTAATGTTAGTTCAGCTGCTCCCTCACACATTTCTAGCACTATTGTTGGTCGAATGGAAATTCCTCCATGTGTTCAGGGTGGGCAATGA 1161 0.4186 MANFTSFSSSSSTPPPPSFSYISAPSSSSTFDDDSFEDSCSICLESFTLHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPASQELLIAVDAEKSVRSRNNYSSSHTNSRVPFGYSNDDHDDSCSDDNDVDEEIMQHLYAAARRARFVQRQKRQGSSGAGPSEMLVFNSSSHVSGVQPTLTTSPDDSSSLTSGLPSIFHNHPQVARNISRPEADVPYRPRVLYSPSPPQDERKLNTSEMFSFPESIKSKFSAASARYKESISKSTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLDLASKRSTSPLIPVRNEGTSGFSEGRFVLEKGIEHAPNEASGGVDRNVSSAAPSHISSTIVGRMEIPPCVQGGQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03587 386 ProSiteProfiles Zinc finger RING-type profile. 40 80 IPR001841 -
Tsu08g03587 386 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 367 - -
Tsu08g03587 386 MobiDBLite consensus disorder prediction 182 206 - -
Tsu08g03587 386 SUPERFAMILY RING/U-box 34 87 - -
Tsu08g03587 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 111 IPR013083 -
Tsu08g03587 386 MobiDBLite consensus disorder prediction 106 122 - -
Tsu08g03587 386 MobiDBLite consensus disorder prediction 106 136 - -
Tsu08g03587 386 Pfam Ring finger domain 38 80 IPR001841 -
Tsu08g03587 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 367 - -
Tsu08g03587 386 MobiDBLite consensus disorder prediction 182 220 - -
Tsu08g03587 386 SMART ring_2 40 80 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03587 Tsu-Chr8 53875374 53879022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03587 23 88 C3H Transcription Factor Family AT5G38895 36.364 8.61e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03587 K19043 - gmx:100785684 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03587 08 53875374 53879022 Tsu08g03587 08 53875374 53879022 ECH