Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03580 atGAGTTGCTTTCCATGCTGCAAATCAGAGGTTGAATCACCTTCATTTAGAGGATGTTCCAAAAAAGTTTCCAAAGGAAGAAGAACATTCAAATCATTTGCAGCTGCTATGTCCCTCAAAACAGGTAGCAGCAGGCATAGACAAATTACAGAAGAGATATTAAAATATGGAACTGCAAAAAATGATGTTAAAATATTCACATTTGAAGAAATAATTGATGCAACAAACAATTTCAGTTCTGATAATCTTGTGGGAGAAGGTGGCTTTGGAAATGTTTACAAAGGACACATGAAAAGCATCGAACAAAATGTAGCCGTGAAGACTCTAAACAGAGAAGGGAATCAAGGAACAAGAGAATTTTTTGCAGAAGTTTTAATGTTAAGTATGGTGAATCATCCAAACCTTGTGAAGCTTCTTGGTTATTGCGTAGAAGATGATCATAGGGCTTTGGTTTATGAGTACATGGCCAATGGTAGCTTGGAGAATCACCTTTTAGATTTAGGTAAGGACAAGGAACCATTGGATTGGGAAACAAGAATGAAAATTGCTGATGGAGCAGCTAGAGGACTTGAATATCTGCATAATTATGCAGATCCACCGGTTATTTTCCGTGATTTTAAATCGTCTAATATACTATTAGATGAAAATTTCAATGCAAAGCTTTCTGATTTTGGTCTTGCTAAGATTGCTCCAAAAGATGGTGAAAACTTGGTCACAACTAGGGTTATGGGGACCTATGGTTACTGTTCACCTGAGTATGCTGCTACCGGTAAATTAACCTCAAAGTCGGATATTTATAGTTTTGGTGTTGTGTTCTTGGAAATAATCACTGGTAGAAGAGTAATTGACACTGCAAGAGACCCAGAAGAACGAAACTTGATTGATTGGGCACAACCAATGTTTAAGGACAGAACAAAGTTCACTCAAATGGCTGATCCTTTGCTTAAAGATCGGTACCCGAACAAGGGACTATTTCAAGCCCTAGCAGTGGCAGCAATGTGTCTACAAGAGGATTTCGAGACGCGTCCTGACATGGACGATGTCGTAGAGGCACTTGAACAGATAACAGTACAAAAAACTGAAGAAAAAGACAAAGCTGCTGGTGAATCTTCAAAATCTGCTGGTCATGCTGAATCTTTTAGATCTCAAAAATCAAGTGGGTCTGAAAGGGCATAA 1176 0.3835 MSCFPCCKSEVESPSFRGCSKKVSKGRRTFKSFAAAMSLKTGSSRHRQITEEILKYGTAKNDVKIFTFEEIIDATNNFSSDNLVGEGGFGNVYKGHMKSIEQNVAVKTLNREGNQGTREFFAEVLMLSMVNHPNLVKLLGYCVEDDHRALVYEYMANGSLENHLLDLGKDKEPLDWETRMKIADGAARGLEYLHNYADPPVIFRDFKSSNILLDENFNAKLSDFGLAKIAPKDGENLVTTRVMGTYGYCSPEYAATGKLTSKSDIYSFGVVFLEIITGRRVIDTARDPEERNLIDWAQPMFKDRTKFTQMADPLLKDRYPNKGLFQALAVAAMCLQEDFETRPDMDDVVEALEQITVQKTEEKDKAAGESSKSAGHAESFRSQKSSGSERA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03580 391 Gene3D Phosphorylase Kinase; domain 1 27 154 - -
Tsu08g03580 391 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Tsu08g03580 391 Gene3D Transferase(Phosphotransferase) domain 1 155 379 - -
Tsu08g03580 391 PANTHER OS07G0668900 PROTEIN 1 389 - -
Tsu08g03580 391 CDD STKc_IRAK 84 355 - -
Tsu08g03580 391 SUPERFAMILY Protein kinase-like (PK-like) 61 355 IPR011009 -
Tsu08g03580 391 MobiDBLite consensus disorder prediction 358 391 - -
Tsu08g03580 391 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 389 - -
Tsu08g03580 391 Pfam Protein kinase domain 80 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03580 391 ProSiteProfiles Protein kinase domain profile. 78 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03580 Tsu-Chr8 53808639 53811567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03580 64 352 Glycoside Hydrolase AT3G07070 61.246 2.91e-131 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Tsu08g03580 Pkinase 5.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03580 - - gmx:100305361 587.8