Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03572 ATGATGCAGCCTGGACATGGTATCGCTCCTCCTAACATCGGCCAACAGCCACCGCAACAGTACCAACATGCGCCGCCACAGCAACCCTACGTCATGATGCCACCTCAAGCCCCACAGGCTTTGTGGGCCCAATCCGCCCAGCCACCTCAGCAGCCCGCCAGCGCCGACGAGGTCCGTACTCTCTGGATCGGCGATTTGCAGTATTGGATGGACGAGAATTATCTCTACACCTGCTTCGGTAACACCGGCGAGGTAACATCTGTGAAAGTGATTAGGAATAAGCAAACTAGTCAATCAGAAGGTTATGGTTTTATTGAGTTTAATACTCGTGCTACTGCTGAAAAAGTGCTTCAGACATACCAAGGAACAATTATGCCAAATGGTGGTCAAAGTTACAGATTGAATTGGGCAACCTTCAGTGCCGGGGAGAGGTCGTCTAGGCAGGATGATGGTCCTGATCATACAATTTTTGTTGGTGATTTGGCTGCTGATGTTACTGATTACCTTCTCCAGGAGACCTTTAGGGCTCGGTATAACTCGGTGAAGGGTGCGAAAGTTGTTATTGATAGGCTCACTGGTAGGTCTAAGGGTTATGGTTTCGTTAGATTTGCTGATGAGGGTGAACAGATGAGGGCCATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGACCAATGAGGATTGGACCAGCTACTAACAAGAACCCTGCTGCTGCAACTCAGCCAAAAGCTTCATATTCGAACACTCCAGGCGGACAAAGCGAGAATGATCCAAATAATACAACCATTTTTGTTGGCAATTTGGATCCTAATGTCACTGACGATCATCTGAGGCAAGTTTTCAGCCAATATGGTGAACTAGTACATGTGAAGATTCCGTCAGGCAAGAGATGTGGGTTTGTCCAATTTTCGGACAGGAGCTGTGCAGAAGAGGCAATAAGAGTTTTAAATGGAACTTTATTGGGTGGACAAAATGTTCGCCTTTCATGGGGCCGCACTCCTTCAAACAAACAGACTCAGCAAGATCCAAACCAGTGGAATGCTGCTGCAGCTGGTGGCGGTGGTGGATACTATGGTTATCCTCAAGGTGGATATGAAAATTATGGTTATGCTGCTGCTCCTGCTGGACAGGATCCCAATGTGTATGGAAGTTATCCGGGTTATGCTGGTTACCAACACCCCCAACACCCACAGCAGCAACAGCAGCAAATGGGATATAGCTAA 1224 0.4771 MMQPGHGIAPPNIGQQPPQQYQHAPPQQPYVMMPPQAPQALWAQSAQPPQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGEVTSVKVIRNKQTSQSEGYGFIEFNTRATAEKVLQTYQGTIMPNGGQSYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAAATQPKASYSNTPGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPSGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTQQDPNQWNAAAAGGGGGYYGYPQGGYENYGYAAAPAGQDPNVYGSYPGYAGYQHPQHPQQQQQQMGYS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03572 407 SMART rrm1_1 262 329 IPR000504 GO:0003723
Tsu08g03572 407 SMART rrm1_1 60 135 IPR000504 GO:0003723
Tsu08g03572 407 SMART rrm1_1 155 229 IPR000504 GO:0003723
Tsu08g03572 407 MobiDBLite consensus disorder prediction 383 407 - -
Tsu08g03572 407 CDD RRM3_NGR1_NAM8_like 260 331 - -
Tsu08g03572 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 139 IPR000504 GO:0003723
Tsu08g03572 407 SUPERFAMILY RNA-binding domain, RBD 21 142 IPR035979 GO:0003676
Tsu08g03572 407 SUPERFAMILY RNA-binding domain, RBD 145 242 IPR035979 GO:0003676
Tsu08g03572 407 MobiDBLite consensus disorder prediction 1 33 - -
Tsu08g03572 407 Gene3D - 11 144 IPR012677 -
Tsu08g03572 407 Gene3D - 145 240 IPR012677 -
Tsu08g03572 407 Gene3D - 241 371 IPR012677 -
Tsu08g03572 407 CDD RRM2_SECp43_like 153 232 - -
Tsu08g03572 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 333 IPR000504 GO:0003723
Tsu08g03572 407 MobiDBLite consensus disorder prediction 393 407 - -
Tsu08g03572 407 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 18 401 - -
Tsu08g03572 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 233 IPR000504 GO:0003723
Tsu08g03572 407 CDD RRM1_SECp43_like 60 140 - -
Tsu08g03572 407 SUPERFAMILY RNA-binding domain, RBD 252 363 IPR035979 GO:0003676
Tsu08g03572 407 MobiDBLite consensus disorder prediction 228 261 - -
Tsu08g03572 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 326 IPR000504 GO:0003723
Tsu08g03572 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 126 IPR000504 GO:0003723
Tsu08g03572 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 219 IPR000504 GO:0003723
Tsu08g03572 407 MobiDBLite consensus disorder prediction 234 261 - -
Tsu08g03572 407 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03572 Tsu-Chr8 53757352 53761383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03572 60 340 Eukaryotic Initiation Factors Gene Family AT4G34110 26.923 1.04e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03572 - - gmx:100794675 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04792 04 55092983 55097107 Tsu08g03572 08 53757352 53761383 PCT