Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03561 ATGACAACTGAAGAGGTTATTGGTAATTCTGCTGTTGGTGCTACAGAAAAACCATTTAAGTTTGAAGGGAATCATTTTAAACGTTGGCAACATAAGATGTATTTTTTCTTAACTCTGAAAAAATGTGTCTACGTTTTAAATGAACCTATTCCTGTTGTTCCTGATGCTACGACTTCTGGTTCAGGAACAAAAGATATTTCTGTAACCACCACCAACGGTGATGATACTGCTTCTgctgcaaaagaaaaaactcaaacTGAAACAGCAGAACAGATTAAAGATAAAACACTGCAAGCTGAAAAGAAAAGACAGCTTTGGATCGATAATGATTATGTttgcaaaaactatatcattaatgGACTGGAAGATGATCTGTATGATTATTACAGAACTTATGATACTGCTCGTGATGTATGGGAggctttgaaaaagaaatatgacACCGAAGAGGCGGGTGTGAAAAAATATGCTGTGAGCCGGTATCTGAAATACCAGATGGTTGATGAAAGGTCAGTGGAGGTACAGTCTCATGAACTCCAGAAGATTGCTCATGAGATAATAACTGAAGGTATGCCTCTCAATGAACAATTTCAGATTGCTGTTATTATTGACAAGCTGCCCCCTGGAtggaaagattttaaaaatcagcttcgtcataaaacaaaagaattttccaTCGAGGGTCTGATTACTCGTCTTCGTATTGAAGAAGAGTCACGGAAACAGGatcagaaagaagaagaaaaaattctgattgtctccaacaataacaaaaagaaattcggTGCGGCTCTGAAGCCTACGGGCAAACCTTTAAAGAATCAGAACCGCAATCAAAACCGAATTAAGAATGGGAACCCTTCTAAGGCCCCATATGCTaggcaacaacaacaacctccaCCTCCTAGAAATGATTCTGGTGAATTCCTATGCTTCAACTGTTGGAAACCAGGTCATTTGGCAAAGAAATGTAGAGGAATGAAAAGGCCGAAACCTGCTCATTTAAATGCTCAAGTAAATGTAACCGATGAGGCTTACACATGTATGATCACCGAAATTAATATGGTCGGTGGTACTGATGGATGGTGGATAGATACTGGCGCCACACGCCATGTCTGTTATGAACGTGCTATGTTTAAAACATACACGAGTGCTGAAAATAAGAAAGTGCAGATGGGAAATGCCCACACTTCAGATGTTGCTAGTGTTGGAGAAGTTGTGCTGAATTTCACCTCCGGGAAGACTCTTATCTTGAAGGATGTCTTACATGTACCCGAGATGAAAAAGAATCTTGTTTATGGGTCTCTTTTGAATAAGGCTGGGTTTAGTCAGACTATTGGGGCAGATTTGTATACCATCACTAAGAATGATACTTTTATTGGGAAAGGATGGCATCTCATTGCTGGGAGAATCCCTGGAAGAACTGCAGAAGATATTGAAAAGTATTGGACTTCAAAgttttcttcatcatcaactGCATGTTAA 1485 0.3455 MTTEEVIGNSAVGATEKPFKFEGNHFKRWQHKMYFFLTLKKCVYVLNEPIPVVPDATTSGSGTKDISVTTTNGDDTASAAKEKTQTETAEQIKDKTLQAEKKRQLWIDNDYVCKNYIINGLEDDLYDYYRTYDTARDVWEALKKKYDTEEAGVKKYAVSRYLKYQMVDERSVEVQSHELQKIAHEIITEGMPLNEQFQIAVIIDKLPPGWKDFKNQLRHKTKEFSIEGLITRLRIEEESRKQDQKEEEKILIVSNNNKKKFGAALKPTGKPLKNQNRNQNRIKNGNPSKAPYARQQQQPPPPRNDSGEFLCFNCWKPGHLAKKCRGMKRPKPAHLNAQVNVTDEAYTCMITEINMVGGTDGWWIDTGATRHVCYERAMFKTYTSAENKKVQMGNAHTSDVASVGEVVLNFTSGKTLILKDVLHVPEMKKNLVYGSLLNKAGFSQTIGADLYTITKNDTFIGKGWHLIAGRIPGRTAEDIEKYWTSKFSSSSTAC 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03561 494 MobiDBLite consensus disorder prediction 271 303 - -
Tsu08g03561 494 Pfam gag-polypeptide of LTR copia-type 106 242 - -
Tsu08g03561 494 MobiDBLite consensus disorder prediction 56 87 - -
Tsu08g03561 494 ProSiteProfiles Zinc finger CCHC-type profile. 311 325 IPR001878 GO:0003676|GO:0008270
Tsu08g03561 494 PANTHER OS08G0421300 PROTEIN 80 462 - -
Tsu08g03561 494 MobiDBLite consensus disorder prediction 261 304 - -
Tsu08g03561 494 SUPERFAMILY Retrovirus zinc finger-like domains 295 334 IPR036875 GO:0003676|GO:0008270
Tsu08g03561 494 MobiDBLite consensus disorder prediction 56 85 - -
Tsu08g03561 494 SMART c2hcfinal6 310 326 IPR001878 GO:0003676|GO:0008270
Tsu08g03561 494 PANTHER PBF68 PROTEIN 80 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03561 Tsu-Chr8 53619787 53627670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03561 461 494 MYB Transcription Factor Family AT1G66380 50.000 1.88e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03561 - - cqi:110699091 464.922