Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03559 ATGTCAACGGTGTACGTTTTGGAACCTCCCACAAAGGGAAAGGTAGTCGTCAACACAACACGTGGCCCTATCGACATTGAGTTATGGCCTAAAGAAGCTCCCAAAGCCGTTAGAAACTTCGTTCAACTCTGTCTCGAAGGTTACTACGACAATACAATCTTCCACCGTATCATCAAAGAATTCCTCGTTCAGTGTGGTGATCCAACCGGCACCGGCACTGGAGGGGAAAGTATTTATGGAGATGTTTTTGCTGATGAGTTTCATTCGCGTATTAAATTCAAGCATAGAGGTTTGGTTGCAATGGCGAATTCTGGAACACCTAATTCTAATGGAAGTCAGTTTTTTATTACTCTTGATCGTTGTGATTGGCTTGATCGAAAACATACCATTTTCGGAAAGgtGACAGGAGATACAATGTATAATCTGTTGAGACTTGGTGAAGTCGAGACTGATAAGAATGACCGGCCATTAGACCCAGCTCCGAAGATATTGTCAGTTGAGGTGTTGTGGAACCCATTTGAAGACATTGTTCCAAGAACACTTCAGAAACCTCAGACTAAACCCACGCATGATACAGATGGTAAAGATGCAAAGAGGAAAGGTGTAAAAAACTTGAACTTGCTTTCATTCGGGGAAGAgactgaagaagaagaaaaagaattgacATTGGTGAAAAAAAAGATTGTGAGCAGTCATGATGTCTTGAATGATCCTCGTCTTCTAAAGGATGAAAATGCTAATAATGAATTGAGTTCATCTGAGAGTAAATTAAAAAGGGACATGCAGTTATCTGTAAGGGATGCACTTAACTCAAAAAAAGAAGAGCCTCAGAAAGATTCAGGAGCTGATAAATTGGCTCATCATGATTCCAGTGATGACGATGAAGCAGATTTTGATTCGAGAATGCGCATGCAAATACTCAAAAAGCGGAAGGAACTGGATGATTTCCCGCCCAAACCAAAGTTGCAAACTGGAAGGTCCAGGACCAGGTCCAGTCCGGAGAACCATACTGCTTCAAGAGCTAGGTCCAATTCTTTAAGTGCTGATGAGGATCAACCAAGAGTGGAAAAACTGTCCATAAAGAAAAAGGGAATAGGATCCGAAGCAAGAGCTGAAAGAATGGCTAATGCAGACACGGATATGCAGCTTTTGAATGAAGCGGAGAGAGGAAGACATTTGCAGAAGCAGAAGAAACGCAGACTTCAAGGGCGTGAAGATGAAGTTCTGGCAAAACTggaaaaatttaaaaccaaGGCGACACCTACAACCGTTGAATCCAAACATGTTAGTGATGAGGTATCTGACTGGAGAAGTGGTGGCTTAAAATTCTCCCCCGCAGTTGGCAAGGACCGCATGTCTCGCACTGAGGATCCAAATGATTATGTTGTGCATGACCCTCTTTTGGAGAAGGGAAAAGAGAAGTTCAATAAGATGCAAGCCAAACAAAAGAGACGAGAACGAGAATGGGCTGGGAGATCCCTTACTTGA 1488 0.416 MSTVYVLEPPTKGKVVVNTTRGPIDIELWPKEAPKAVRNFVQLCLEGYYDNTIFHRIIKEFLVQCGDPTGTGTGGESIYGDVFADEFHSRIKFKHRGLVAMANSGTPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPAPKILSVEVLWNPFEDIVPRTLQKPQTKPTHDTDGKDAKRKGVKNLNLLSFGEETEEEEKELTLVKKKIVSSHDVLNDPRLLKDENANNELSSSESKLKRDMQLSVRDALNSKKEEPQKDSGADKLAHHDSSDDDEADFDSRMRMQILKKRKELDDFPPKPKLQTGRSRTRSSPENHTASRARSNSLSADEDQPRVEKLSIKKKGIGSEARAERMANADTDMQLLNEAERGRHLQKQKKRRLQGREDEVLAKLEKFKTKATPTTVESKHVSDEVSDWRSGGLKFSPAVGKDRMSRTEDPNDYVVHDPLLEKGKEKFNKMQAKQKRREREWAGRSLT 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03559 495 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 203 IPR044666 -
Tsu08g03559 495 MobiDBLite consensus disorder prediction 186 200 - -
Tsu08g03559 495 CDD cyclophilin_CeCYP16-like 8 180 - -
Tsu08g03559 495 SUPERFAMILY Cyclophilin-like 14 187 IPR029000 -
Tsu08g03559 495 MobiDBLite consensus disorder prediction 324 346 - -
Tsu08g03559 495 MobiDBLite consensus disorder prediction 419 495 - -
Tsu08g03559 495 MobiDBLite consensus disorder prediction 179 200 - -
Tsu08g03559 495 MobiDBLite consensus disorder prediction 347 375 - -
Tsu08g03559 495 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 5 203 - -
Tsu08g03559 495 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Tsu08g03559 495 MobiDBLite consensus disorder prediction 449 495 - -
Tsu08g03559 495 MobiDBLite consensus disorder prediction 239 405 - -
Tsu08g03559 495 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Tsu08g03559 495 MobiDBLite consensus disorder prediction 253 321 - -
Tsu08g03559 495 Gene3D - 2 183 IPR029000 -
Tsu08g03559 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Tsu08g03559 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Tsu08g03559 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Tsu08g03559 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Tsu08g03559 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03559 Tsu-Chr8 53595481 53602082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03559 9 173 U-box Gene Family AT5G67530 47.273 3.41e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03559 K12737 - gmx:100793148 766.533