Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03558 ATGGAAACAATTTCTAATACGTTGTTGGTCTTCTTGATGATACCTTTTTTCCTCCTAAACATGATTAGTTGTGAGGATGATGAGGTGAAGAGAACACTGATACAGTTCCTGACACAACTCAAAGGCCAGCAGAACAATAATTCCACTTTGCTTTGGAAACCAGATACTGATCCTTGTAAAGATCAGTGGAATGGTGTAATCTGTGATGCTCAAATGTCTATAAAGAGGTTGGATCTTTACAGGTTCAATTTGTCTGGAACCCTTGATGTGGCGTTGCTTTGCAATTCGCAGCCTCTAGCTGCATCGCTCACCTTTCTTAGTCTTGATGACAACAACATCAGTGGTGGAATAGCATCCGAGATTGGAAACTGCAAACAACTCACTCGTCTTCACCTAAGCGGAAACCAACTTGCTGGAAAACTTCCTACTTCGCTTGCCACGttgaacaatttgaaaagaCTAGACCTTTCGAACAACAAGTTTTCGGGACCGTTGCCAAACCTGGATAGAATCTCAGGCCTCAATATGTTCCTAGCACAAAACAATGACCTTAGTGGAAATATACCAGCATTTTATTTCTCTAATTTTGACCATTTCAATGTTTCTTTTAACAATTTCAGTGGTCTAATTCCAGATGTGCAAGGTTATTTCTCTGCCGACAGTTTTCTCGGTAATCCAGCACTATGCGGATATCCACTACCGAAAAATTGTTCTAGTCAGATTCTGCAGAGTACTTCTAGTAAGATATCAGAAGAAGAATCAAAGGGTCCATCTAAAGAGCAGATGCTTATCTATTCAGGCTATGCTGCATTAGGTGTTATCGTAATCCTTTTTGTAGTCTTGAAGCTATGTAGAGGAAAGAAACGAGGAAAGAAAATTGAAGCAGAATCAAATGGTGATATCGAAAAAACAAGCTATGTTTCAAGGGAATCCAAAGCAGACGAAGCAAGCAAATCAGGATTTTCAGTTTCTTCTGAAAATGGAATGGTCTCACAACAATCACTTATTGTTCTTGCAAGGCCAGTGGTGAATGAATTGAAAATGGATGACTTGTTAAGAGCACCTGCTGAAATGATTGGGAGAGGGAAGAATGGAAGTCTTTATAAGGTGATGCTAACCAATGGAATAGTAGTGGTTGTGAAAAGGATTAAGGATTGGAGTATTTCTAGTGTTGAATTCAAGCAAAGAATGCAACTATTGAATCAAGCAAAGCATCCTCATGTTCTGTCACCTCTTGCTTTCTATTGTTCCAAACAAGAGAAACTTTTGGTATATGAATATCAGCAGAATGGAAGTTTGTTCAAGCTTCTACATGGTAAATCAAAAACCTTTGATTGGACCAGCAGACTTGGAATTGCATCTACAATTGCTGAAGCATTAGCTTTCATGCATCAAGAGTTAGGCCAACATGGTATTATTCATGGTAACATGAAATCATCAAACATTTTGCTAAACAATAACATGGAACCTTTTATAAGTGAATATGGTACTATGCCTAAGGATGATCAACAAAGTTCAACTTTTGCAACACCTATTGCTAATGATGCATTCAAAGTTGATGTTTATGGCTTTGGAGTTATTCTTCTTGAACTTCTTACTGGAAAATTGGTGAAGAATGATGGTATTGACTTGACTGATTGGGTTCAATCAGTTGTAAGGGAAGAATGGACAGGTGAAGTGTTTGATAGGTCATTGTTGAAAGAGTATGCAAGTGAAGAGAGGATGGTTAATATGCTTCAAGTGGCTATAAGATGTGTTAATAGTTCCTTAGAGGCTAGGCCAAGTATGAATCAAGTGGTTCTTATGATTAATACTATCAAAGATGAAGAGGAAAAATCATTGATTTACCAAGTTTGA 1857 0.3764 METISNTLLVFLMIPFFLLNMISCEDDEVKRTLIQFLTQLKGQQNNNSTLLWKPDTDPCKDQWNGVICDAQMSIKRLDLYRFNLSGTLDVALLCNSQPLAASLTFLSLDDNNISGGIASEIGNCKQLTRLHLSGNQLAGKLPTSLATLNNLKRLDLSNNKFSGPLPNLDRISGLNMFLAQNNDLSGNIPAFYFSNFDHFNVSFNNFSGLIPDVQGYFSADSFLGNPALCGYPLPKNCSSQILQSTSSKISEEESKGPSKEQMLIYSGYAALGVIVILFVVLKLCRGKKRGKKIEAESNGDIEKTSYVSRESKADEASKSGFSVSSENGMVSQQSLIVLARPVVNELKMDDLLRAPAEMIGRGKNGSLYKVMLTNGIVVVVKRIKDWSISSVEFKQRMQLLNQAKHPHVLSPLAFYCSKQEKLLVYEYQQNGSLFKLLHGKSKTFDWTSRLGIASTIAEALAFMHQELGQHGIIHGNMKSSNILLNNNMEPFISEYGTMPKDDQQSSTFATPIANDAFKVDVYGFGVILLELLTGKLVKNDGIDLTDWVQSVVREEWTGEVFDRSLLKEYASEERMVNMLQVAIRCVNSSLEARPSMNQVVLMINTIKDEEEKSLIYQV 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03558 618 Gene3D Transferase(Phosphotransferase) domain 1 429 617 - -
Tsu08g03558 618 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Tsu08g03558 618 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Tsu08g03558 618 Gene3D Phosphorylase Kinase; domain 1 324 427 - -
Tsu08g03558 618 ProSiteProfiles Leucine-rich repeat profile. 150 172 IPR001611 GO:0005515
Tsu08g03558 618 PANTHER OS05G0588300 PROTEIN 9 616 - -
Tsu08g03558 618 SUPERFAMILY L domain-like 50 232 - -
Tsu08g03558 618 Pfam Protein kinase domain 357 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03558 618 PANTHER OS10G0387400 PROTEIN 9 616 - -
Tsu08g03558 618 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Tsu08g03558 618 Gene3D Ribonuclease Inhibitor 97 244 IPR032675 -
Tsu08g03558 618 Gene3D Ribonuclease Inhibitor 21 96 IPR032675 -
Tsu08g03558 618 SUPERFAMILY Protein kinase-like (PK-like) 356 603 IPR011009 -
Tsu08g03558 618 ProSiteProfiles Protein kinase domain profile. 353 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03558 Tsu-Chr8 53592674 53595363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03558 52 607 Receptor kinase-like Gene Family AT1G68400 35.479 2.50e-90 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu08g03558 Pkinase 9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03558 - - gmx:100813796 864.374