Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03554 ATGGATCAAAAGAAACAAGAGCAGCCAAGGGAACAAGTCAATCATGCTCCAACAGAAACACAAGCAAATGgagaaaaccaaaatcaatcaAACCAGATAATGCAACTATCTCACCCTCTAATTCACAGTGCAGGAGCTTCTGCCTTTTCATCCTATCTGAGCAGAGATCAATTCCAACATTTTTCTCAAAACTTCTTTAACCAACAAGCTTTGTATTCAAACCTCGCCACTTTCTGGGCGAACCAATACAAAGAAATTCAGGAGACCgtggatttcaaaaaaaatcgcATTCCTTTATTAAGGATAAAGAAGATAATGAAagttgataagcaagtgaataAGATATCGGCTGGTGCACCTCTGCTGCTTGCTAAGGCATGTGAGATGTTTATTATGGAGCTAACAATAAGGTCTTGGGCTAATGCAGATTTTAACAAAAGAAGAACACTTCATAAGTGTGACATTGCATCTGCAATATCAAATACTGATATATTTGATTTCTTAGTTGATATTGTTCCAAAGGAAGACACAATGGAACATGACATATTTACGGATGTACCAAGAAGAGAGTCTGTTCCAATAAGGAATGTTAATGTTCCTTATTATTATGTGCCTGTTCCTGTGCAACCTCAGTATGTTCCTGTGCAACCTCAGTATGTTGCAGGTCCATCCTATGGTTCTCCAAGAATGCTTATGGGAGGACATGTTCTCAATCAACCTCAGCTACCTCATCCTTTTGCAAATCAAATGTTTCCAATTCTAAAACAGGAAAATGATGATTCTACTCATTTGCCTGATTCAGAGAATTAA 810 0.3531 MDQKKQEQPREQVNHAPTETQANGENQNQSNQIMQLSHPLIHSAGASAFSSYLSRDQFQHFSQNFFNQQALYSNLATFWANQYKEIQETVDFKKNRIPLLRIKKIMKVDKQVNKISAGAPLLLAKACEMFIMELTIRSWANADFNKRRTLHKCDIASAISNTDIFDFLVDIVPKEDTMEHDIFTDVPRRESVPIRNVNVPYYYVPVPVQPQYVPVQPQYVAGPSYGSPRMLMGGHVLNQPQLPHPFANQMFPILKQENDDSTHLPDSEN 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03554 269 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 96 159 IPR003958 -
Tsu08g03554 269 Gene3D Histone, subunit A 56 174 IPR009072 GO:0046982
Tsu08g03554 269 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 7 253 - -
Tsu08g03554 269 SUPERFAMILY Histone-fold 52 168 IPR009072 GO:0046982
Tsu08g03554 269 MobiDBLite consensus disorder prediction 13 28 - -
Tsu08g03554 269 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 253 - -
Tsu08g03554 269 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03554 Tsu-Chr8 53557750 53558559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03554 78 249 CCAAT-HAP5 Transcription Factor Family AT1G08970 47.093 2.55e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tsu08g03554 CBFD_NFYB_HMF 2.2e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03554 K08066 - nnu:104612503 176.407