Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03522 ATGGTACCGCGACAATTTCTTGCGATAACTAATGGAACAACAGAAGTTGATGATCAAGTatcaaattcttcatctgatGAAAGAACAAGATCAAATACACCTATGAATAATCAAATTGAAGGTGGAAATAGAGATCATATAAGAAATAACAATGGTAAAATTGGTAGAGAAGATAGTCCAGAATCAGAATCACAAGGTTGGGGTCCTAATAAGGCTCAGAAAATATTGAACTCTTCCAATGTTAATGATCAAGCAAATACAGAAGCTACAATGAGAAAAGCTCGTGTCTCCGTTCGTGCTAGATCGGAAGCTTCAATGATTAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCGAAAGGAAATCCGTGTCCTCGCGCATATTATAGATGCACTATGGCAGTTGGTTGTCCGGTTCGCAAACAAGTTCAACGTTGTGCCGAGGACAAAACAATTTTAGTAACAACATATGAAGGAACACATAACCATCCATTACCACCGGCCGCAATGGCAATGGCATCGACAACTTCAGCAGCAGCTAGCATGTTACTATCAGGATCAATGTCAAGTGCAGATGGAATAATGACACCAAATTTATTAGCAAGAGCTATTCTTCCTTGTTCAACAAGTATGGCAACACTTTCAGCTTCAGCACCATTTCCAACTGTTACATTAGATCTTACACAAaactcaaatccaaatccaaatccaaatccattacAATTTCAAAGACCTCATCATGCACCATTTCAAGtacctaatttttttcaaggACAACAACAGCCTCAGAATTTTGCACAAGCAGCAGCATCACTTTACAATCAATCTAAATTCTCTGGTCTTCAATTATCTCAAGAAATTGGTTCGTCTCATTTGACCACACAAGCTCCAACacaacagcagcaacaacagCCTTCTTTGGCCGACTCGGTCAGCGCCGCAACAGCTGCGATCACTTCGGATCCTAATTTCACGGCTGTTCTCGCCGCCGCTATATCTTCCATTATTGGTGGTGGTAATGCAAACAATAACAATgccaacaccaacaataataGCAGAAGTACTATTAGCAACTTTTCAGGAAACTAA 1095 0.3626 MVPRQFLAITNGTTEVDDQVSNSSSDERTRSNTPMNNQIEGGNRDHIRNNNGKIGREDSPESESQGWGPNKAQKILNSSNVNDQANTEATMRKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTILVTTYEGTHNHPLPPAAMAMASTTSAAASMLLSGSMSSADGIMTPNLLARAILPCSTSMATLSASAPFPTVTLDLTQNSNPNPNPNPLQFQRPHHAPFQVPNFFQGQQQPQNFAQAAASLYNQSKFSGLQLSQEIGSSHLTTQAPTQQQQQQPSLADSVSAATAAITSDPNFTAVLAAAISSIIGGGNANNNNANTNNNSRSTISNFSGN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03522 364 ProSiteProfiles WRKY domain profile. 102 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu08g03522 364 SUPERFAMILY WRKY DNA-binding domain 100 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu08g03522 364 Gene3D WRKY domain 92 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu08g03522 364 MobiDBLite consensus disorder prediction 1 97 - -
Tsu08g03522 364 Pfam WRKY DNA -binding domain 109 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu08g03522 364 MobiDBLite consensus disorder prediction 7 45 - -
Tsu08g03522 364 MobiDBLite consensus disorder prediction 63 91 - -
Tsu08g03522 364 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 354 IPR044810 GO:0003700
Tsu08g03522 364 SMART WRKY_cls 107 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu08g03522 364 MobiDBLite consensus disorder prediction 341 364 - -
Tsu08g03522 364 MobiDBLite consensus disorder prediction 46 60 - -
Tsu08g03522 364 PANTHER WRKY TRANSCRIPTION FACTOR 31-RELATED 1 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03522 Tsu-Chr8 53270985 53273878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03522 1 352 WRKY Transcription Factor Family AT1G62300 58.696 3.29e-115 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu08g03522 WRKY 3.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03522 - - gmx:100802124 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03522 08 53270985 53273878 Tsu08g03522 08 53270985 53273878 ECH
Tsu08g03522 08 53270985 53273878 Tsu04g04820 04 55288500 55291055 ECH
Tsu02g04795 02 57149696 57153810 Tsu08g03522 08 53270985 53273878 ECH