Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03516 ATGGCcaatttaatcaattttattattctcCTCTTATTTGTTATCACATTATGTATAATTCTACCTACCTTAGCTAATTcagattcaaaaaaaattcataacaaTGACCTATTAGATAATATTCCAACACCAAGCTACAACAACATCCCTAATAGTAACACTCCACAAAATGTTGATATTATGAACACAATTGATTCATGTTggagaaaaaattcaaattgggCATCAAATCGTCAATCATTAGCAGATTGCGCGATAGGGTTTGGTAAAAACGCAATAGGTGGAAAATACGGTGAAATATATGAAGTAACTGATCCATCCGACGACCCAATAAATCCAAAACAAGGTACATTACGTTACGGCGTAATCCAAACGGAACCACTTTGGATAACATTTGCAAATGACATGTTTATTAAGCTAAAAAATGAGCTTATTGTAAATAGTTATAAAACAATTGATGGTAGAGGTGTTAAAGTTGAAATTGGAAATGGACCTTGTATTACAATACAAGGTGTAAGTCATGTGATTGTGCATGGAATTAGTATTCATGATTGTAAACCTGGTGAAGCTGGTGATGTTAGGAGTAGTAATGAACATGTTGGTTATCGTGAAGGTTGTGATGGTGATGGTATTAGTGTTTTTGCTTCTTCTAATGTTTGGATTGATCATTGCTTTTTGGCAAGATGTGCTGATGGACTTACTGATGTTACTCATGCTTCAACTCTTGTTACTATCTCAAATACTTACTTCACCCAACATGACAAAGTGATGTTGCTAGGACACAATGATGATTATAGTGCTGATAGAGTAATGAAAGTAACAGTTGCTTTCAACTACTTTGCCAGTGGCCTAATAGAAAGAATGCCAAGGGTAAGATTTGGTTATGCTCATGTTGTAAACAACCGATATGATGAGTGGCTCATGTATGCCATTGGTGGTAGTGCTGACCCTACAATTTTCAGTCAAGGAAATTACTTTATGGCTTCAAAAAAATCAGATGCAAAACAGGTTACAAAGAGAGAAACTGATGGAAAATGGAATAATTGGAAATGGAGGACTGATGGGGATGAATTCTTAAATGGTGCTTATTTTGTGCCATCTGGATATGGAAGTTGTGCACCATTATATTCAACTGATCAAAACTTTGTTGCTGCAAAAGCTTCCTTGGTGCCTTTATTAACACTCAATGCAGGACCTCTTGATTGTGTTGCTAACAAAGCATGTTAA 1227 0.339 MANLINFIILLLFVITLCIILPTLANSDSKKIHNNDLLDNIPTPSYNNIPNSNTPQNVDIMNTIDSCWRKNSNWASNRQSLADCAIGFGKNAIGGKYGEIYEVTDPSDDPINPKQGTLRYGVIQTEPLWITFANDMFIKLKNELIVNSYKTIDGRGVKVEIGNGPCITIQGVSHVIVHGISIHDCKPGEAGDVRSSNEHVGYREGCDGDGISVFASSNVWIDHCFLARCADGLTDVTHASTLVTISNTYFTQHDKVMLLGHNDDYSADRVMKVTVAFNYFASGLIERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPTIFSQGNYFMASKKSDAKQVTKRETDGKWNNWKWRTDGDEFLNGAYFVPSGYGSCAPLYSTDQNFVAAKASLVPLLTLNAGPLDCVANKAC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03516 408 Pfam Pectate lyase 141 326 IPR002022 -
Tsu08g03516 408 SUPERFAMILY Pectin lyase-like 82 406 IPR011050 -
Tsu08g03516 408 PRINTS Pollen allergen Amb family signature 84 101 IPR018082 -
Tsu08g03516 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Tsu08g03516 408 PRINTS Pollen allergen Amb family signature 107 132 IPR018082 -
Tsu08g03516 408 PRINTS Pollen allergen Amb family signature 143 159 IPR018082 -
Tsu08g03516 408 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Tsu08g03516 408 PRINTS Pollen allergen Amb family signature 207 228 IPR018082 -
Tsu08g03516 408 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Tsu08g03516 408 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Tsu08g03516 408 PANTHER PECTATE LYASE 50 407 - -
Tsu08g03516 408 Gene3D - 61 401 IPR012334 -
Tsu08g03516 408 PANTHER PECTATE LYASE 18-RELATED 50 407 IPR045032 GO:0030570
Tsu08g03516 408 SMART amb_all 135 332 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03516 Tsu-Chr8 53233298 53235866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03516 62 408 Polysaccharide Lyase AT1G11920 70.115 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03516 K01728 - gmx:100803229 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03516 08 53233298 53235866 Tsu08g03516 08 53233298 53235866 ECH