Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03504 ATGATCACAACATATCAAATTTTCTTagttttcttaattttctttctctctgtTATGAGAACAGAGGGAAGCTGTTCTTCAAGCTGCCTTGCTCTAGCATCCTATTACATACAAGAAGGAACAAATCTAACTTACATTAACAACCTTTTCAACCAACAATCCTCAGAAATTCAAAAGTACAACCCAAATCTTAAAAACATCGATGTTATTCTAACTCATACAAGAATAAACGTGCCATTCACGTGTGAGTGTCTAAACGGTTTGTTCTTAGGACACACTTTCTCGTACACAGCGAATCATGGTGACACATACAGCTCAATTGCTAACCTTATATATTCGAATCTTACAACTGAGGATTGGGTGACTAGAGTCAATAGTTATAGACCTACGGATATTCCTGACAGTGCTAAAATCAATGTTACTGTTAATTGTTCTTGTGGTGATAAACATGTGTCAAAAGATTTTGGGTTGTTTTTGACTTACCCAATTCGGAAAGGTCAAAATTTGAAGAGTATTGCGGCGGAGAATGGTGGTGTTCCGGCGGCCGTGTTGCAGAGGTATAATCCTAGTTCGGATTTTAGTGCTGGACATGGTCTTGTTTTTGTGCCGGCTAGAGGAATGTCCAAAGGAGCCATTGCTGGCATAGTTGTTGGAGGAGCTTTTGGGATCTTACTTTTGGCACTCATTCTATATATGGTGTTCTATAGAAGGAAAAAAGTAGCTGAAGTTACCCTTCTACCAGTTCCAGGAGCATCTGATGATCAATATAGTCAACTCCAACATGGTTGTGGAAGCAGCATAGATAAGGCATCAGAATCTACTACTGCTGCTTCTCCAAGGTTGACAGGTATTACAGTTGACAAGTCAGTTGAGTTCTCATATGAGGAGTTAGCCAAAGCTACCGATAGCTTTAGCGAGGCTAATATAATCGGTCGAGGTGGATTTGGTTCTGTATACTATGCCGAGCTTCGAAACGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAAAGAATTCTTAGCCGAACTAAAGGTTCTAACACATGTCCACCATTTGAACTTGGTGCGGCTAATTGGATATTGTGTTGAGGGCTCtttatttttggtttatgaGTACATTGAGAATGGCAATTTAAGTCAACATTTGCGCGGCACAGAGAAGGATCCATTATCATGGCCAGCTAGAGTTCAAATTGCATTAGACTCAGCAAGAGGATTGGAATACATTCATGAGCATACAGTTCCTGTCTACATTCATCGAGATGTTAAATCAGCCAACATTTTGATCGACAAAAACTTTCGTGGAAAGGTTGCAGATTTTGGTTTGACAAAATTGACCGAATATGGTAGTTCCTCGTTACAAACGCGCCTTGTTGGGACATTTGGTTATATGCCTCCGGAATATGCACAATATGGTGAAGTTTCTCCCAAAATAGATGTATATGCATTTGGAGTTGTTTTGTTTGAGCTTATATCTGGAAAACAAGCTATTGTGAAGACAAATGAGCCTGAGAGTGAATCAAAAGGACTAGTTGCACTGTTTGAAGAAGTTCTTGTTCTGCCAGACCCAAAAGAAGATCTTGGTAAATTTGTTGACACCAGACTTGGTGAAAATTACCCTATTGACTCAGTATTTAAGATGTGTCAACTTGCCAAAGCATGTACACATGAAAATGCTCAACTTAGGCCAAGCATGAGATCAATTGTTGTTGCCTTAATGACACTTTCATCAGCAGCTGAGGATTGGGATGTTGGCTCTTTCTATGAAAACCAAGCATTAGTTCATTTAATGTCTGGAAGGTAG 1809 0.3875 MITTYQIFLVFLIFFLSVMRTEGSCSSSCLALASYYIQEGTNLTYINNLFNQQSSEIQKYNPNLKNIDVILTHTRINVPFTCECLNGLFLGHTFSYTANHGDTYSSIANLIYSNLTTEDWVTRVNSYRPTDIPDSAKINVTVNCSCGDKHVSKDFGLFLTYPIRKGQNLKSIAAENGGVPAAVLQRYNPSSDFSAGHGLVFVPARGMSKGAIAGIVVGGAFGILLLALILYMVFYRRKKVAEVTLLPVPGASDDQYSQLQHGCGSSIDKASESTTAASPRLTGITVDKSVEFSYEELAKATDSFSEANIIGRGGFGSVYYAELRNEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGTEKDPLSWPARVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEVSPKIDVYAFGVVLFELISGKQAIVKTNEPESESKGLVALFEEVLVLPDPKEDLGKFVDTRLGENYPIDSVFKMCQLAKACTHENAQLRPSMRSIVVALMTLSSAAEDWDVGSFYENQALVHLMSGR 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03504 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Tsu08g03504 602 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 6 602 IPR044812 GO:0019199|GO:0045087
Tsu08g03504 602 SUPERFAMILY Protein kinase-like (PK-like) 283 574 IPR011009 -
Tsu08g03504 602 CDD STKc_IRAK 310 571 - -
Tsu08g03504 602 Pfam Protein tyrosine and serine/threonine kinase 308 573 IPR001245 GO:0004672|GO:0006468
Tsu08g03504 602 ProSiteProfiles Protein kinase domain profile. 304 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03504 602 Gene3D Phosphorylase Kinase; domain 1 277 374 - -
Tsu08g03504 602 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-LIKE 6 602 - -
Tsu08g03504 602 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Tsu08g03504 602 Gene3D Transferase(Phosphotransferase) domain 1 375 586 - -
Tsu08g03504 602 SMART serkin_6 304 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03504 Tsu-Chr8 53158765 53166381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03504 7 602 Receptor kinase-like Gene Family AT3G21630 55.806 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tsu08g03504 PK_Tyr_Ser-Thr 7.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03504 - K13429 gmx:100802308 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03504 08 53158765 53166381 Tsu08g03504 08 53158765 53166381 ECH