Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03500 ATGGCACataccctttttctttttcttaccTCATTCTCTTTGAtcctttcttttcttcatttttctcttgCCAACACTGACCCTTCTGATGTTCAAGCTCTTGAAGTTATGTACAATGCACTGAATAATCCAACTGAATTAAAGGGTTGGAAAATTGGTGGTGGTGATCCATGTGGAGATTCATGGAAAGGGATTACTTGTGAAGGTTCAGCTGTTGTTTCTATTGATCTTTCTGGTTTAGGACTCCATGGAACTCTTGGATATTTACTTTCAGACCTTAGGTCACTTAGAAAGCTTGACTTGAGTGGCAACAAGATCCATGATCAAATTCCCTATCAGTTGCCACCAAATCTTACAAGCCTAAATCTCGCAGGAAATAACTTAACCGGAAATCTTCCATATTCGATTGCTATCATGGTTTCACTCAATTATCTGAATGTGAGCAATAATGCACTCTCTATGTCAATTGGAGACATTTTTGCTAATCATTCCGATCTTGATACCCTGGATCTATCATTTAATAACTTTTCCGGGGAACTTCCACCTTCATTTGGTTCACTGTCAAATCTGTCTTCTCTTTTCTTGCAGAAGAATCAGTTGACGGGCTCTCTTAATGTTCTTGTTGGTTTGCCGTTGGATGATTTAAATGTCGCAAACAATAATTTTAGTGGATGGATACCTCGTGATCTTAAATCTATCGATAATTTCATATATGATGGAAATTCTTTTAATGATGGCCCTGCACCTCCTTCGCCAGAATCTACTTCGTCTCCACCTCCACCAAGTGAATCTCATAAACGTACTCATCACTCCGGGCCTGGTTCACATAATAAAACACAGGGTTCTAATGATCAAAATTCCGATGGCGATAAGGGAACTTCAGCGGGGGCCATTGTTGGGATTGTTTTAGGTTCAGTGTTGGTGTTTTCTGTTGTTCTAGTTGCTCTTGTTTTCTGTATCCGAAAACTAAAAGGGAAGGAAAAGGGTGCAAGAACTTCTAACGGAAGCCTTCCTCCCGGAATAATCAACGTAACTCCTCAGATGCAAGAGCAAAGGGTGAAAAGTTCTGCTGTTATTACAGATCTCAAACCTCGTCCGCCTGCAGAAAATGTGACAATGGATAGGATGGCTATAAAAAGTGGATCAGTAAAGCAGATGAGGTCTCCCATCACTTCCACGTCGTACACAGTTGCTACGCTCCAGAGTGCAACAAATAGCTTCAGTCAAGAATTTATTATTGGTGAAGGTTCTCTTGGTAGAGTTTACAGGGCTGAATTCCCAAATGGGAAGGTAATGGCCGTTAAGAAGATTGACAATGCAGCACTGTCCTTACAAGAGGAAGATAATTTTCTTGAAGCTATTTCGAATATGTCACGCTTGCGGCATCCCAACGTTGTTACACTTGCTGGTTATTGTGCAGAACATGGCCAACGACTTCTAATTTATGAATATATTGGAAATGGGAATCTGCACGACATGCTCCATTTTACTGAAGATAGCAGTAAAGCTTTACCTTGGAATGCCCGTGTACGCATAGCTCTTGGCACAGCCCGGGCCTTAGAGTACTTGCACGAAGTTTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATCAGCAAATATATTACTTGACGAGGAGCTCAATCCTCACCTGTCTGACTGTGGCTTAGCTTCCCTAACACCAAACACCGAAAGACAGGTTTCATCAACTCAAATGGTTGGTTCATTCGGTTATAGTGCTCCCGAGTTTGCATTATCAGGACTATACACCGTAAAAAGCGATGTTTACAGCTTTGGAGTGGTTATGCTGGAACTTCTAACTGGTCGAAAGCCACTTGACAGttCAAGAGTTAGAGCTGAGCAGTCACTTGTGAGATGGGCTACACCGCAGCTCCATGATATAGATGCCCTGTCCAAAATGGTTGATCCTTGTTTGAATGGCATGTATCCTGCAAAGTCGTTGTCACGCTTCGCTGATATCATTGCCCTCTGCGTTCAGCCGGAACCTGAATTTCGACCTCCAATGTCCGAGGTGGTGCAAGCATTGGTACGGTTAGTACAAAGAGCGAGTGTGGTTAAAAGGAGACCAAGTGAAGAATCTGGTTTTGGTCACAAGACACCAGACCATGAGTCCATGGACATGTCATTTTAA 2151 0.4138 MAHTLFLFLTSFSLILSFLHFSLANTDPSDVQALEVMYNALNNPTELKGWKIGGGDPCGDSWKGITCEGSAVVSIDLSGLGLHGTLGYLLSDLRSLRKLDLSGNKIHDQIPYQLPPNLTSLNLAGNNLTGNLPYSIAIMVSLNYLNVSNNALSMSIGDIFANHSDLDTLDLSFNNFSGELPPSFGSLSNLSSLFLQKNQLTGSLNVLVGLPLDDLNVANNNFSGWIPRDLKSIDNFIYDGNSFNDGPAPPSPESTSSPPPPSESHKRTHHSGPGSHNKTQGSNDQNSDGDKGTSAGAIVGIVLGSVLVFSVVLVALVFCIRKLKGKEKGARTSNGSLPPGIINVTPQMQEQRVKSSAVITDLKPRPPAENVTMDRMAIKSGSVKQMRSPITSTSYTVATLQSATNSFSQEFIIGEGSLGRVYRAEFPNGKVMAVKKIDNAALSLQEEDNFLEAISNMSRLRHPNVVTLAGYCAEHGQRLLIYEYIGNGNLHDMLHFTEDSSKALPWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLASLTPNTERQVSSTQMVGSFGYSAPEFALSGLYTVKSDVYSFGVVMLELLTGRKPLDSSRVRAEQSLVRWATPQLHDIDALSKMVDPCLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSEESGFGHKTPDHESMDMSF 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03500 716 Gene3D Transferase(Phosphotransferase) domain 1 485 702 - -
Tsu08g03500 716 SUPERFAMILY L domain-like 27 232 - -
Tsu08g03500 716 MobiDBLite consensus disorder prediction 241 291 - -
Tsu08g03500 716 SMART LRR_typ_2 93 121 IPR003591 -
Tsu08g03500 716 SMART LRR_typ_2 187 210 IPR003591 -
Tsu08g03500 716 SMART LRR_typ_2 139 162 IPR003591 -
Tsu08g03500 716 MobiDBLite consensus disorder prediction 696 716 - -
Tsu08g03500 716 CDD STKc_IRAK 413 685 - -
Tsu08g03500 716 Gene3D Phosphorylase Kinase; domain 1 369 484 - -
Tsu08g03500 716 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 24 712 - -
Tsu08g03500 716 ProSiteProfiles Protein kinase domain profile. 407 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03500 716 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Tsu08g03500 716 Pfam Protein tyrosine and serine/threonine kinase 412 682 IPR001245 GO:0004672|GO:0006468
Tsu08g03500 716 Gene3D Ribonuclease Inhibitor 27 262 IPR032675 -
Tsu08g03500 716 MobiDBLite consensus disorder prediction 274 291 - -
Tsu08g03500 716 PANTHER OS01G0253100 PROTEIN 24 712 IPR045271 GO:0004714|GO:0006468
Tsu08g03500 716 SUPERFAMILY Protein kinase-like (PK-like) 384 682 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03500 Tsu-Chr8 53009612 53015321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03500 139 716 Strubbelig Receptor Gene Family AT4G22130 70.294 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Tsu08g03500 PK_Tyr_Ser-Thr 3.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03500 - - gmx:100781455 1100.12