Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03499 atggAGGGTAGTAGTTCTAATGGAAATTCTTCTTATCATGTTATGAGTGCTTTTGGTGAAAACAGTGGTGGGCTATGTTCTTCAATGATGATGATGCCTTTAGTCACTtctcatcatcaacatcatcatcaacaacaacatcatcaacataatCATCCATTAAATTCCAACAATAATCCTAATAACAACAATACTAATGCAAACAACACTAGTTGTCACTTCCTTCCTATCCCTAATTccactaataataacaacaataatcacTACAACAATTGTAATAATAACACCACTTCTTCTATCATGCTTCAAAACAACCACACCAACAACAATACTACTACTCCTGGTTTAGGTTACTATTTCATGGATAACAACAATAATGgaagttcttcatcttcatcttctgcTGTTAAATCCAAAATCATGGCTCATCCTCACTATCATCGTCTCTTAGAAGCTTACATCAATTGTCAAAAGGTTGGAGCACCAGGTGAAGTTGTGGCTAGGTTAGAAGAAGCATGTGCATCTGCAGTAAGAATGGGTGGAGAAGGAGTTGGATCAGGTTGCATAGGTGAAGATCCAGCTTTGGATCAGTTTATGGAAGCTTATTGTGAGATGTTGATTAAGTATGAACAAGAACTCTCTAAACCCTTGAAAGAAGCCATGCTTTTTCTTCAAAGAATTGAAGTCCAGTTCAAAAATCTTacagtttcttcttcttcagataATATTGCTTGTAATGAAAGTGGAGATAGGAAtggatcatctgaagaagatcATGTTGATCTATACAACATGGTAGATCCTCAGGCAGAAGACAGAGAATTAAAGGGTCAGCTTTTGAGAAAGTACAGTGGATATTTGGGCAGTCTGAAGCAAGAATTcatgaagaaaaggaaaaaaggaaAACTACCAAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCCTCTGAGTCACAGAAGCTGGCACTAGCAGAGTCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGAAAAAGGCACTGGAAGCCATCAGAGGACATGCAGTTTGTGGTAATGGATCCAAGTCATCCACAttattacatggaaaataatgTTCTCAACAATTCATATCCTATGGATTTATCCAACACCATGCTCTAG 1182 0.3206 MEGSSSNGNSSYHVMSAFGENSGGLCSSMMMMPLVTSHHQHHHQQQHHQHNHPLNSNNNPNNNNTNANNTSCHFLPIPNSTNNNNNNHYNNCNNNTTSSIMLQNNHTNNNTTTPGLGYYFMDNNNNGSSSSSSSAVKSKIMAHPHYHRLLEAYINCQKVGAPGEVVARLEEACASAVRMGGEGVGSGCIGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTVSSSSDNIACNESGDRNGSSEEDHVDLYNMVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMENNVLNNSYPMDLSNTML 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03499 393 SMART KNOX1_2 134 178 IPR005540 GO:0003677|GO:0005634
Tsu08g03499 393 ProSiteProfiles 'Homeobox' domain profile. 294 357 IPR001356 GO:0003677
Tsu08g03499 393 Gene3D - 299 361 - -
Tsu08g03499 393 MobiDBLite consensus disorder prediction 37 79 - -
Tsu08g03499 393 Pfam KNOX1 domain 135 174 IPR005540 GO:0003677|GO:0005634
Tsu08g03499 393 SMART ELK_2 274 295 IPR005539 GO:0003677
Tsu08g03499 393 SUPERFAMILY Homeodomain-like 296 372 IPR009057 -
Tsu08g03499 393 ProSiteProfiles ELK domain profile. 274 294 IPR005539 GO:0003677
Tsu08g03499 393 Pfam Homeobox KN domain 314 353 IPR008422 GO:0003677|GO:0006355
Tsu08g03499 393 Pfam KNOX2 domain 188 235 IPR005541 GO:0003677|GO:0005634
Tsu08g03499 393 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 381 - -
Tsu08g03499 393 MobiDBLite consensus disorder prediction 50 79 - -
Tsu08g03499 393 SMART HOX_1 296 361 IPR001356 GO:0003677
Tsu08g03499 393 SMART KNOX2_2 185 236 IPR005541 GO:0003677|GO:0005634
Tsu08g03499 393 PANTHER - 1 381 - -
Tsu08g03499 393 CDD homeodomain 306 358 IPR001356 GO:0003677
Tsu08g03499 393 ProSitePatterns 'Homeobox' domain signature. 332 355 IPR017970 GO:0000981|GO:0006355
Tsu08g03499 393 Pfam ELK domain 274 295 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03499 Tsu-Chr8 52975557 52982818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03499 136 393 Homeobox Transcription Factor Family AT1G62360 78.327 8.72e-131 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tsu08g03499 KNOX2 3.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03499 - - gmx:100805837 509.22