Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03496 ATGAAGCATCTCCTTAGATCAGCTCGAACATGGCGGTTACGTTTCCGTTCAGCTCCTTCTTCCCAAACCCTAACTTCTCACTCCTTCCGCCGCATTCACTCTTCTCTCTCGCCAAaAGTAGAATCTGCGTCTGCTAAATCAAGCTATGTCTCCGATGTTTCGAGTTCGAGAGCTTTACGAGGGGATTTGGGGATGTTTCCTGCTGTTTTGGCTGGTTTATTTGGAATTGGATTGGTGGAAACGGCTTATGCGGATGATGCTACTGAGGATGTGCAAGAAATTGCTAAGAAAGAGCGTCAGAGAATTCAGGACTTGCTTACAACTAAGGGAATTCGACAAGGTTCTTATCCTCGATTCAATGTCGCTGTTAAAGGCCAGAAGGTCAGTATAAAgtttcaaattcctcctggtTGTGAAGTTTCACAACTTATTGCAAATCTTACTGCACATCTTGGACTGAAATCTGAAGGCCATGGCGGTGGTTCAGATATGATGTTGCGTGCATGGGACAGCACGGTTGCTTGGCAACTTACCCTTACTCATCCATCAAAGCAAAAACATATTCAACAGAATGAACATTCTTCAACAGATACAAGTGCACAGGATAGAGATTTATGCATACTTATATTTCATTCTCTCATTGGCTCAGATAAAGTTGAAATTGAATTTATGAAGCAAGGGAACTTGAGTGCCGAAGAGCTTGATGCTTTCGTATCTATTTTACAATTAGCTGGAAACAAGTTGGTAGAAAGAAATCCCCTGGCAAGAAAGCCAAGGGAAGAGACCGAACAGGTGCCATCTGTAGATAAAGCTATTTCTAGTCTTGAGGACATGGGAGTAAGAACTTATGGACTCAAAGAACCCATAGGCGTATCAAATGATGAGATATCATGGGACATCATCGCCGGGTACGAGCATCAAAAAAGgGTAATAGAAGATACAGTACTATTGGCTTTGCGTAGTCCTGAAGTATATGATGATATTGCTCGAGGGACTCGGCATAAGTTTGAGTCTAACAGACCTCGAGCCGTGCTGTTTGAAGGTCCACCAGGTACAGGGAAAACCTCTTGTGCTCGTGTTATTGCCAATCAAGCGGGTGTCCCTTTGCTTTATGTGCCCCTTGAGGTTGTAATGTCTGAATTCTACGGTAAAAGTGAACGTCTTCTAGGGAAAGTGTTTTCACTAGCAAACGATCTTCCCAATGGTgctattatatttttggatgaGATTGATTCTTTTGCTGCTGCTCGTGATAATGACATGCATGAAGCTACACGTAGAATATTGTCAGTATTATTGCGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTGGTTGTCATTGCTGCCACAAATAGAAAGGAAGACCTTGATCCTGCATTAATTAGTCGGTTTGATACTATGATCCCTTTTGGTTTACCTGATCATCATAATCGTCAGGAAATAGCATCCAAATATGCAAAGCACCTGTCTAAAGCCGAACTTGATGAACTTGCAAGTGTTACAGAAGATATGGCTGGAAGGGATATTAGAGATGTTTGTCTGCAAGCGGAACGGTCCTGGGCATCaaagATTATTCGGGGACAAGTATCTAAAGATGACGAACAAGTGAACCTTCCACCTTTGCAAGAATATATAGTGTGTGCTACACATCGACGGGAAGCGCTGCTTAGTGCTGCTGCAAATAGGAAGCTCCGAAATTCTTCCCGCCGCAGGATAATAAGTGAATAA 1731 0.4183 MKHLLRSARTWRLRFRSAPSSQTLTSHSFRRIHSSLSPKVESASAKSSYVSDVSSSRALRGDLGMFPAVLAGLFGIGLVETAYADDATEDVQEIAKKERQRIQDLLTTKGIRQGSYPRFNVAVKGQKVSIKFQIPPGCEVSQLIANLTAHLGLKSEGHGGGSDMMLRAWDSTVAWQLTLTHPSKQKHIQQNEHSSTDTSAQDRDLCILIFHSLIGSDKVEIEFMKQGNLSAEELDAFVSILQLAGNKLVERNPLARKPREETEQVPSVDKAISSLEDMGVRTYGLKEPIGVSNDEISWDIIAGYEHQKRVIEDTVLLALRSPEVYDDIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEVVMSEFYGKSERLLGKVFSLANDLPNGAIIFLDEIDSFAAARDNDMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDTMIPFGLPDHHNRQEIASKYAKHLSKAELDELASVTEDMAGRDIRDVCLQAERSWASKIIRGQVSKDDEQVNLPPLQEYIVCATHRREALLSAAANRKLRNSSRRRIISE 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03496 576 Gene3D - 293 473 IPR027417 -
Tsu08g03496 576 CDD AAA 337 473 - -
Tsu08g03496 576 ProSitePatterns AAA-protein family signature. 445 464 IPR003960 GO:0005524|GO:0016887
Tsu08g03496 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 519 IPR027417 -
Tsu08g03496 576 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 72 559 - -
Tsu08g03496 576 Gene3D - 474 543 - -
Tsu08g03496 576 Pfam ATPase family associated with various cellular activities (AAA) 344 472 IPR003959 GO:0005524|GO:0016887
Tsu08g03496 576 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 72 559 - -
Tsu08g03496 576 SMART AAA_5 340 475 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03496 Tsu-Chr8 52932391 52939372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03496 340 540 Calmodulin-binding Proteins AT3G56690 36.364 1.53e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03496 - - mtr:MTR_2g024440 938.717