Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03461 ATGTCTCTTATCCTGACTATCAAACGGACTATTAAGTATAAAGCAAAAGAGCAAGATGATTTTAGTAACTTCTCGGCTTTTCTAGCACCGCCAACACTAACTCCCGAGGCTCCAAGTTACTCGATTTCTACCCCATCCGATGTTGAAGACACTTGgagaaaaaatatgtttgatgcTAAGCCATTCATCGATTTGGCTCTTCCACCGCCGCGTGGCGTTTTTCCACCGCCGTGTGACATTTTTCCACTGCCGCGAGGCATTCCTTTTCCATCGCCGCTTTCACCGCTGCTTGGCCCTCCTAGCAATGcaatttcttttattgtttcatttttgGCTCTTCCACCGCCGCGTGGCCCCCTTCCACCGCTACAAGACATTCCTTTTCCACCGCTGCTTGGCCCTCCTGTTGTGCAGGGGAGTCCCAAAACAGAGTTGTGCAAATTCTGGCAGAATAATCCCAGTTGCCCTCATACTGTTTGCAAATTTGCTCATGGTGAGCATGAGCGTTGCCAAGTGAAATACCACGAAAGCTACCAAACTAAGCTCTGTAGAAATTTTTTCTCTGAGCATGGTTGCGATTATGGCACCAGATGTCATTTCATGCATTAG 609 0.4499 MSLILTIKRTIKYKAKEQDDFSNFSAFLAPPTLTPEAPSYSISTPSDVEDTWRKNMFDAKPFIDLALPPPRGVFPPPCDIFPLPRGIPFPSPLSPLLGPPSNAISFIVSFLALPPPRGPLPPLQDIPFPPLLGPPVVQGSPKTELCKFWQNNPSCPHTVCKFAHGEHERCQVKYHESYQTKLCRNFFSEHGCDYGTRCHFMH 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03461 202 SUPERFAMILY CCCH zinc finger 175 202 IPR036855 GO:0046872
Tsu08g03461 202 Gene3D - 138 171 - -
Tsu08g03461 202 Gene3D - 172 202 - -
Tsu08g03461 202 SMART c3hfinal6 140 166 IPR000571 GO:0046872
Tsu08g03461 202 SMART c3hfinal6 177 202 IPR000571 GO:0046872
Tsu08g03461 202 ProSiteProfiles Zinc finger C3H1-type profile. 140 167 IPR000571 GO:0046872
Tsu08g03461 202 PANTHER CCCH ZINC FINGER/TIS11-RELATED 92 202 IPR045877 GO:0003729
Tsu08g03461 202 ProSiteProfiles Zinc finger C3H1-type profile. 177 202 IPR000571 GO:0046872
Tsu08g03461 202 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 178 202 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03461 Tsu-Chr8 52620106 52622625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03461 138 202 C3H Transcription Factor Family AT1G68200 46.970 2.12e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu08g03461 zf-CCCH 2.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03461 - K18753 sanh:107678244 73.9442