Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03453 ATGAAAGACGTCACCAAAACGACGTCGTCGAGGTACCAATTCTTCGTACGGTGGAACTGTAACTCCTTAGTGATTCTTGCTTCAAGAAAAGACACAGTGAAATCGCTTCTCAGGAAACTTTCATCTAAAACCAAAATTCCGATTCAAGAACTACGATTAATTTACAAAGGAAAACAGCTTCAAAATGAACAGATTCTCGGCGAATGCGGTATTCAAAACGATGAAACTCTTCAATTGCTTGGTTATTTGAGGAGTACACAGTGTCCTAAAGTTTGGGTAGCAACAGAATTTATTGCTTCATTGATTCTCAAACTTTGTAGAGGTGAAAATGTGAATTCTttcaaatttattcaaaatcactttaaaaATTACATGGAAAAAGCtgaatattttgatgtttttatgtTTATGAAAATTCCTTCATTGTTGGTAGAACTTTATATGTCGTCGGGTGATAATAATAAAAGCCTTGCTGATTCGTTGATTAAGGAATTTGTGCAAGTATGTTTAGAATTGAAGTGCAAAGAGGTGCAGGTTTTGTACCTTGAAGCTGTTTTGGAGTTTTGTGAATTGCTTAGAGGGGTAGGGTGTAAGTGTGATGATCTTTTGTATGTTTTTTGCCGGAATGGTTTTGCAACTCTGTTGGTGTTTGTTGGGGGTGTTACTGCCTTTTGGAATTATTCTAAATGGAGGGTTTTGTTTCGAGGTATTTTTTTCTGTGTTTGTGAGACTTTAGATGCGTTGTTGAGTTATTTGGATCTGAGTATGAGTTATCCGATTAGCGAGGAGATTTCGCGTAGTGTTGTTTGGTCTTTTGTGAAATTCTCGACACCTTTGAGGAATGGAATTGCCGAGAACCAACAAGCATTCGATGAATATGAGAATGGAACTTGCTATGAGGAGTTTGCAGGAGTAGTTGGTCAATTTCGTAATGTATTTATTCAGTTACTGACCAAAATGGATGAGTGCCTTCAAGTCATGGAGAATTGCTTGGTTAACAAGGAACAAAGAGATGTTATCCATAATGGGCAGTCTCATTATCTGTTCATCCTGAAGGAATTGTATCACATATCTAAGCTATATAGCGGTGCAGAAGAGATGTTTTGGAGAGTTTTGTTGCGTCGAAAAAGTATGCTATCTCATCTGATTGTCCGGTATGCGGATAAAAAGGATAATCATAGGTGGGTACTTGAGAACATGAGTGTGACCAATTTTGAATCAAGGAGGCATTTGGCGATGACACTATTCCCTGACTTAAGACATGACATATTGGGATATGAGATGCTTATTGGCAGGtctgaggttttggctgaatcTTTTGAGTACATATCACGAGCTAGGCCTACATCTCTGGAGGGAGGTTTATTTATGGAATTCAGGAATGAGGAGGCTACAGGACCAGGTGTTCTGAGGGAGTGGTTTGTTTTGGTGTGTAAGGAAATATTTAATCCGAAAAATGCTCTTTTTGTGGCATGTCCAAATGACCATAGGAGATTTTTTCCTAATGCTGCATCTAATGTACATCCTCTacatctaaagtacttcagctTCTCTGGACGTATGATTGCATTAGCTTTGAAGAGTAAGGTGCATGTGGGTATTTATTTTGATCGTGTGTTTTTCAAGCAATTGGCTGGAAACTATATTACTTTAGAAGATATTCGAGATGCCGATCCTATAATGTATCATAGCTGCAAGCAAATATTGGAGATGAATGCTGATTGTATTGATTCAGATGCATTAGGACTGACATTTTCTACAGAGGTGGAAGAATTAGGACACAGGAAAGTGATTGAGCTTTGCCCTGGTGGCGAAAGCCTTGTTGTGGATAGTAAGAACAGGGAGAAGTATGTTGATCTTCTTATACAGAATCGTTTTGTGACATCCATATCTGGGCAGGTATCACATTTTGCCGCGGGTTTTGCTGATATTATATCTGGCTCAAGGCTAGAGTTCTTTCGATATTTAGAACTTGAAGATCTTGATTGGATGTTGCATGGGAGTGAAAATGCCATTTCTGTTGAAGATTGGAAGGCACATACTAAGTATAATGGCTATAAAGAGATTGATCGTCAGATAACTTGGTTTTGGGAGATCGTTGGGAGAATGTCGGCAAAGCAAAAGAAGGTTCTTCTGTTCTTTTGGACATCTGTGAAACATTTACCAGTTGAAGGTTTCCGTGGTTTGGATTCCCGTCTATTCATTTGCAAATCCAGCGAATCTAATAATCACTTGCCCACATCTCACACGTGTTTTTACGAGCTGTGCTTTCCTCGGTATTCTTCTAAGGCTATCATGCAAGATCGCCTTAGAATCATCACTCAAGAACACATGAGCTGCAGTTTCGGTACTCTGTGA 2358 0.3774 MKDVTKTTSSRYQFFVRWNCNSLVILASRKDTVKSLLRKLSSKTKIPIQELRLIYKGKQLQNEQILGECGIQNDETLQLLGYLRSTQCPKVWVATEFIASLILKLCRGENVNSFKFIQNHFKNYMEKAEYFDVFMFMKIPSLLVELYMSSGDNNKSLADSLIKEFVQVCLELKCKEVQVLYLEAVLEFCELLRGVGCKCDDLLYVFCRNGFATLLVFVGGVTAFWNYSKWRVLFRGIFFCVCETLDALLSYLDLSMSYPISEEISRSVVWSFVKFSTPLRNGIAENQQAFDEYENGTCYEEFAGVVGQFRNVFIQLLTKMDECLQVMENCLVNKEQRDVIHNGQSHYLFILKELYHISKLYSGAEEMFWRVLLRRKSMLSHLIVRYADKKDNHRWVLENMSVTNFESRRHLAMTLFPDLRHDILGYEMLIGRSEVLAESFEYISRARPTSLEGGLFMEFRNEEATGPGVLREWFVLVCKEIFNPKNALFVACPNDHRRFFPNAASNVHPLHLKYFSFSGRMIALALKSKVHVGIYFDRVFFKQLAGNYITLEDIRDADPIMYHSCKQILEMNADCIDSDALGLTFSTEVEELGHRKVIELCPGGESLVVDSKNREKYVDLLIQNRFVTSISGQVSHFAAGFADIISGSRLEFFRYLELEDLDWMLHGSENAISVEDWKAHTKYNGYKEIDRQITWFWEIVGRMSAKQKKVLLFFWTSVKHLPVEGFRGLDSRLFICKSSESNNHLPTSHTCFYELCFPRYSSKAIMQDRLRIITQEHMSCSFGTL 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03453 785 ProSiteProfiles HECT domain profile. 447 785 IPR000569 GO:0004842
Tsu08g03453 785 SUPERFAMILY Ubiquitin-like 6 85 IPR029071 -
Tsu08g03453 785 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 6 782 - -
Tsu08g03453 785 SMART hect_3 445 783 IPR000569 GO:0004842
Tsu08g03453 785 Gene3D Hect, E3 ligase catalytic domains 430 660 - -
Tsu08g03453 785 Gene3D Hect, E3 ligase catalytic domain 547 629 - -
Tsu08g03453 785 Gene3D Hect, E3 ligase catalytic domain 669 784 - -
Tsu08g03453 785 SMART ubq_7 12 82 IPR000626 GO:0005515
Tsu08g03453 785 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 6 782 - -
Tsu08g03453 785 SUPERFAMILY Hect, E3 ligase catalytic domain 427 772 IPR035983 GO:0004842
Tsu08g03453 785 CDD HECTc 427 783 IPR000569 GO:0004842
Tsu08g03453 785 Gene3D - 12 80 - -
Tsu08g03453 785 Pfam HECT-domain (ubiquitin-transferase) 476 777 IPR000569 GO:0004842
Tsu08g03453 785 ProSiteProfiles Ubiquitin domain profile. 1 86 IPR000626 GO:0005515
Tsu08g03453 785 Pfam Ubiquitin family 15 80 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03453 Tsu-Chr8 52571258 52578619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03453 13 84 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.247 9.22e-06 44.3