Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03440 ATGGTTTCTCTTGAAGAATCTCGTTCGAATTCGAATCGTTTTCCGTTGCCACGAACCTATCAGTATCATTCATCTAAATCGGAGCGTAACATAGGAAGATCGATGCGAACAAGAAGATCTAGTATCTTCGATGAAGATAACAGTAGTTGCACTTTTACCGAGAGATCCACGTGTGTATCGGAAAATTTAACCGATTCCGTCGTCGACCTTCGTCTCGGTGAACTCGCTTCCCGGAATAACAAATCCGGTAAATCCTCTGCAACTGAGCAAGAGCTTCTTGATTTATCTCAAGTTTTCAGTGAATATTCTGCTTGTAGTAGTGATATCTCCGGTGAACTTCAGCGTTTGGCGACGTTACCGTCGCCGGAATGTAATCTGAAGAATGACGGTGGAGGTGGAGGAGATGGtgttgttgaagttgaaccGGAGCCTTGCATGGGGTTTTTGCAGAGAGAGAATTTCTCAACAGAGATTATTGAGAGTATTTCTCCGGAGGATCTTCAACCGACGGTGAAGCTTTGTATCGACGGTCTACAATCTTCGTCGGTGGCTGTGAAGCGTTCCGCGGCGGCGAAACTGAGGTTGTTAGCTAAGAATCGTGCTGATAATAGAGTTTTGATTTGTGAATCCGGTGCTGTACCTTTTCTTGTTCCTCTGCTTCGATGCAGTGATCCATGGACGCAAGAACATGCAGTAACAGCGCTTTTGAATCTTTCACTTCATGAGGATAACAAGAAGGTGATATTCAATGCCGGAGCTGTGAAATCGTTGATTTATGTGTTGAAAACAGGGACAGAAACTTCGAAACAGAACGCAGCTTGTGCACTTTTGAGTTTAGCTTTAGTTGAAGAAAACAAGAGCTCAATTGGAGCTTCTGGCGCAATTCCGCCTCTTGTTTCGCTTCTGCTAAACGGTTCAAACAGAGGGAAAAAAGATGCTTTAACGACACTGTATAAGCTTTGTTCTGTTAAGCAGAATAAGGAAAGAGCTGTTACCGCCGGTGTGGTGAAGCCGTTGGTTGAGCTCGTTGCTGAGCAAGGGAATGGTATGATGGAGAAAGCAATGGTGGTGTTGAATAGTTTAGCGGGAATTGAAGAAGGTAAGGAAGCTATTGTTGAAGAAGGTGGAATAGCTGCTCTTGTTGAAGCCATTGAAGATGGGTCAGTGAAAGGAAAGGAATTTGCAGTTTTAACACTTCTTCAGCTTTGTGCTGAGAGTGTTACAAATAGAGGGTTACTTGTTAGAGAAGGTGGAATtcctcctcttgtagctctttCCCAGAATGGAACTCCTCGAGCTAAGCATAAGGCTGAGACGCTACTTCGATACTTGAGAGAATCAAGACAAGAAGCATCAACTTCGACTTCTTAA 1371 0.4274 MVSLEESRSNSNRFPLPRTYQYHSSKSERNIGRSMRTRRSSIFDEDNSSCTFTERSTCVSENLTDSVVDLRLGELASRNNKSGKSSATEQELLDLSQVFSEYSACSSDISGELQRLATLPSPECNLKNDGGGGGDGVVEVEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCIDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLICESGAVPFLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKVIFNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVTAGVVKPLVELVAEQGNGMMEKAMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVTNRGLLVREGGIPPLVALSQNGTPRAKHKAETLLRYLRESRQEASTSTS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03440 456 MobiDBLite consensus disorder prediction 1 40 - -
Tsu08g03440 456 SMART arm_5 406 446 IPR000225 GO:0005515
Tsu08g03440 456 SMART arm_5 282 322 IPR000225 GO:0005515
Tsu08g03440 456 SMART arm_5 364 404 IPR000225 GO:0005515
Tsu08g03440 456 SMART arm_5 200 240 IPR000225 GO:0005515
Tsu08g03440 456 SMART arm_5 241 281 IPR000225 GO:0005515
Tsu08g03440 456 Pfam Armadillo/beta-catenin-like repeat 202 239 IPR000225 GO:0005515
Tsu08g03440 456 Pfam Armadillo/beta-catenin-like repeat 284 322 IPR000225 GO:0005515
Tsu08g03440 456 PANTHER U BOX DOMAIN-CONTAINING 6 453 - -
Tsu08g03440 456 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 453 - -
Tsu08g03440 456 SUPERFAMILY ARM repeat 168 445 IPR016024 -
Tsu08g03440 456 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 211 253 IPR000225 GO:0005515
Tsu08g03440 456 MobiDBLite consensus disorder prediction 1 28 - -
Tsu08g03440 456 Gene3D - 152 313 IPR011989 -
Tsu08g03440 456 Gene3D - 314 455 IPR011989 -
Tsu08g03440 456 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 376 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03440 Tsu-Chr8 52405658 52408970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03440 148 449 U-box Gene Family AT2G23140 48.387 3.03e-84 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03440 - - gmx:100806768 712.99