Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03430 ATGTTTGTTGTGGAGAATTTGCTTCAGTTCCCAGATACTGTTCCAAGTAGTATCAGAGCAAAGATAGGCTTTACAACACATCCTAGAAGTGAACGAATGAGAAAGTTGCAAGAGCTTGTTCTAAACTTCGACAAGCAAACTTGCACATCAGACATGTTGGAATTGGCTGTAGAGTACATTAATGATCTTCAAGAACAATTAAAGATTATGACAGCAAAGGAAGCTAAATGCAGGTGCAGAAATCATAAATGA 252 0.373 MFVVENLLQFPDTVPSSIRAKIGFTTHPRSERMRKLQELVLNFDKQTCTSDMLELAVEYINDLQEQLKIMTAKEAKCRCRNHK 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03430 83 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 30 80 IPR036638 GO:0046983
Tsu08g03430 83 CDD bHLH_AtbHLH_like 30 70 IPR045239 -
Tsu08g03430 83 Gene3D - 29 83 IPR036638 GO:0046983
Tsu08g03430 83 PANTHER TRANSCRIPTION FACTOR BHLH130 1 82 - -
Tsu08g03430 83 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03430 Tsu-Chr8 52204472 52204881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03430 4 79 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 54.023 2.86e-23 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03430 - - mtr:MTR_7g092540 131.339