Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03425 ATGGGAATTTCTCAAGAACAACCAACTTCAGCTTGTATTAATTCATCATCTAATGGTAGTAGCAGTCAAGGAACCAATGTTTCTTTTGAAACAAGTAACATGCAGAAGCAATTCTATACCTTGGAATCATCTCAAGCAGCCACTGATTTCACAGCTTTTGATTCTCCTTCATCTTACTCCTCTAACAATAACATGAGTGGATCGCCGATAAGTGTTTACTATAGCGCGGATAATAATAGCTTTGAATTGAAGCAAAAACTTAAAGAATTGGAGATTTCATTGTTAGGCCCCGAGTCAGATATCGTCGATAGCTGTCAGTCCTTCTCAAACGGTAGCCGTCACCAAGGTGTGTCTCGATATAATTGGTCTGAGATTGTAGAAATGATTCCAAAGCTAGACTTGAAAGAAGTTCTCATTGCATGTGCACAAGCTGTTTCTGATGGTGATATTGAAACTGCATCAGGATACATGAACAATGTGTTGGGAAAAATGGTATCGGTTAGTGGTGATCCGATTCAGAGGTTAAGTGCTTACATGTTGGAAGGTTTAAGAGCAAGGTTGGAATCATCAGGGAGTGTAATTTATAAAGCACTGAAATGTGACGAACCGACGAGCAACGAATTAATGAATTATATGCAAATATTGTATCATGCTTGCCCATATTTTAAGTTTGCTTACATATCTTCCAATGTTGTCATTTGTGAAGCATTGCAAAATGAGTCAAGAATTCACATAATTGACTTCCAAATTGCACAAGGGACACAATGGTTGTCACTTTTGCAGGCTCTTACGCATAGACCAGGCGGACCTCCGTTCGTTCGTGTAACAGGTATCGATGATTCACAATCGTTTCATGCTAGAGGTGGAGGACTTCATATTGTAGGAAAAAAGATAACAGATTATGCTAAAACTTGTGGAGTTCCATTTGAGTTTCATAGTGTTGCAATGTTTGGAAGTGATGTTCAATTGGAAGATCTCGTAGTTCAAAATGGTGAAGCTCTTGTGgtgaatttttcttttgctttgcATCACATGTCAGATGAGAGCGTGAGCACGGAGAATCATAGAGACCGACTTTTGAGATTGGTGAGGAGTTTGTCACCTAAGGTTGTGTTACTTGTGGAGCAAGAATCTAACACAAACACTTCTCCATTTTTTCAAAGGTTTGTTGAGACTTTGGATTATTATACTGCTATGTTTGAATCAattgatgtagctcttcctAGAGATGATAAGAAGAGGATTAGTACAGAACAACACTGTGTTGCTCGCGATATCGTTAACATTATAGCTTGTGAGGGAGATGAGAGGGTTGAAAGACATGAACTTTTTGGAAAGTGGAGGGCAAGATTTTCAATGGCGGGTTTTGTACTGTTACCGTTGAGTTCCTCGGTAATTGATTCAATTAGAAATCTCTTGAAACATTTCAATGAAAATTATAGGATTGAAGTGACAGATGTTGCTATCTATTTAGCATGGAAGAGTAGATTTATGTGCACATCTTCTGCTTGGAGATGTTCTTGA 1524 0.3753 MGISQEQPTSACINSSSNGSSSQGTNVSFETSNMQKQFYTLESSQAATDFTAFDSPSSYSSNNNMSGSPISVYYSADNNSFELKQKLKELEISLLGPESDIVDSCQSFSNGSRHQGVSRYNWSEIVEMIPKLDLKEVLIACAQAVSDGDIETASGYMNNVLGKMVSVSGDPIQRLSAYMLEGLRARLESSGSVIYKALKCDEPTSNELMNYMQILYHACPYFKFAYISSNVVICEALQNESRIHIIDFQIAQGTQWLSLLQALTHRPGGPPFVRVTGIDDSQSFHARGGGLHIVGKKITDYAKTCGVPFEFHSVAMFGSDVQLEDLVVQNGEALVVNFSFALHHMSDESVSTENHRDRLLRLVRSLSPKVVLLVEQESNTNTSPFFQRFVETLDYYTAMFESIDVALPRDDKKRISTEQHCVARDIVNIIACEGDERVERHELFGKWRARFSMAGFVLLPLSSSVIDSIRNLLKHFNENYRIEVTDVAIYLAWKSRFMCTSSAWRCS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03425 507 PANTHER SCARECROW-LIKE PROTEIN 13 10 504 IPR030005 -
Tsu08g03425 507 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 504 IPR005202 -
Tsu08g03425 507 MobiDBLite consensus disorder prediction 1 27 - -
Tsu08g03425 507 Pfam GRAS domain family 134 505 IPR005202 -
Tsu08g03425 507 ProSiteProfiles GRAS family profile. 125 505 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03425 Tsu-Chr8 52088450 52089995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03425 26 505 GRAS Transcription Factor Family AT4G17230 55.289 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu08g03425 GRAS 4.1e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03425 - - gmx:100817987 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04864 04 55602757 55606126 Tsu08g03425 08 52088450 52089995 PCT