Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03419 ATGGGTCGTTCTCGTGGGAATTTTCATCATGCTGATGAAGATCCTAGCCAAAGGTCAAGGAGAAAGAAGAATGCTGCAAGTGGTGAGAATTCAGAATCTGGTGCTGCTGGTCAAGGAGCAAGTGAAGGGAAAAGGGCTTTGTATCATTGCAACTACTGTAACAAAGATATTACAGGAAAGATCCGTATTAAGTGTGCTATGTGTCCTGATTTTGACTTATGTATCGAGTGCTTTTCTGTTGGAGCTGAGGTGCAACCGCACAAAAGCAATCATCCTTACAGGGTCATGGACAATCTGTCTTTCCCTCTTATCTGCCCTGACTGGAATGCAGATGATGAAATTTTGCTTCTGGAGGGAATTGAAATGTATGGCATGGGAAACTGGGCTGAAGTTGCTGAGCATGTCGGAACAAAGAACAAAGAAGCATGCATTGAGCACTATCAGAATGTGTACTTGAACTCTCCGTTTTTTCCTCTTCCGGACTTGTCTCATGTTGTTGGGAAGAACAAAAAAGAACTTCTTGCTATGGCGAAAGGGCAGGGTGAGGACAAGAAAGGACCTTCCATCGGGGATCTTAGCATCAAGGAAGAATCACCCTTTTCTCCGGCTAGAGTCAAAACTGAAGATTCCCATAAGACTGGTTCCAATAGCCGTTTGACTTCCCATTTGAATTCTGAGTCAGATTCTGGACCCTCAGTCAACAACCATGCTGCTGCTAGTGCTAACCAGAGGGCATCCAACAAAGGCCGGGGAAAAGGTGGTCCTGGAATCGTTAAAACTGAAGATTCTCCAATGGACAAAGATTTTGGAGGAAATAAGCCAAATCCCTCAGGAAATAACGGCCCTTCTTTAGTTGAACTCAGCGGTTATAACGCGAAAAGACAGGAATTTGATCCTGAATATGATAATGATGCTGAACAACTACTTGCTGAAATGGAGTTTAAGGACACTGACACTGAGGAGGAGCGAGAGATCAAGCTTCGTGTGCTGCGTATCTATTCAAAAAGGCTTGATGAAAGGAAGCGCAGGAAGGAATTCATAATTGAAAGGAATTTGTTATATCCAAGTGAGTTTGAGAAGGATTTGACACCTGAGGAAAGGGCAATATGCCGGAAATATGACATGTTCATGCGCTTTCATTCTAAGGAAGAGCACGAAGAATTGCTTAGAACCACTATAGAGGAACATAGAACTCTGAAAAGACTTACAGACCTTAAGGAAGCCAGGGCTGCTGGTTGCCGCAATCCAGCTGAAGCCGAAAGATATCTGGCACAAAGGAGAAGAAAGGAAGCTGAAGAAAGTGCTCGTAGGGCAAGAGAAGGTGCTCATGTCGGCCCGAACAATCACGGGGTTCCGAATGCATTGATGTCTCCAGACTCTACTGGCACAAGACCTGCTGGGCCAGCTAATTCAAGTTCTGTCAATCAAATGGATTTATCAGGATACTATGGAGCAGATTTACTTTCTGAAGCTGAGAAACGCTTATGCTGTGAGTTAAGGATGGCTCCTGCCATGTATCTGAAGATGCAAGAGCAACTGTCTGTTCAAATGATTACTGGTGCTGTCACTTCAAAATCCGAGGCTCATCAAATGTTCAAGATGGAGGATCCCATCAAAATTGACAGGGTTTATGACATGCTGATCAAGAAGGGAATCGGTTCACCCTAA 1668 0.4418 MGRSRGNFHHADEDPSQRSRRKKNAASGENSESGAAGQGASEGKRALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVQPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGMGNWAEVAEHVGTKNKEACIEHYQNVYLNSPFFPLPDLSHVVGKNKKELLAMAKGQGEDKKGPSIGDLSIKEESPFSPARVKTEDSHKTGSNSRLTSHLNSESDSGPSVNNHAAASANQRASNKGRGKGGPGIVKTEDSPMDKDFGGNKPNPSGNNGPSLVELSGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDTEEEREIKLRVLRIYSKRLDERKRRKEFIIERNLLYPSEFEKDLTPEERAICRKYDMFMRFHSKEEHEELLRTTIEEHRTLKRLTDLKEARAAGCRNPAEAERYLAQRRRKEAEESARRAREGAHVGPNNHGVPNALMSPDSTGTRPAGPANSSSVNQMDLSGYYGADLLSEAEKRLCCELRMAPAMYLKMQEQLSVQMITGAVTSKSEAHQMFKMEDPIKIDRVYDMLIKKGIGSP 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03419 555 MobiDBLite consensus disorder prediction 425 475 - -
Tsu08g03419 555 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 554 IPR034318 GO:0003713|GO:0006357|GO:0035065
Tsu08g03419 555 SUPERFAMILY Homeodomain-like 462 552 IPR009057 -
Tsu08g03419 555 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Tsu08g03419 555 Gene3D - 40 96 IPR043145 -
Tsu08g03419 555 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Tsu08g03419 555 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Tsu08g03419 555 MobiDBLite consensus disorder prediction 177 286 - -
Tsu08g03419 555 MobiDBLite consensus disorder prediction 1 27 - -
Tsu08g03419 555 Gene3D - 469 553 IPR036388 -
Tsu08g03419 555 PIRSF Txn_adaptor_ADA2 35 555 IPR016827 GO:0003713|GO:0006357|GO:0035065
Tsu08g03419 555 SMART sant 104 153 IPR001005 -
Tsu08g03419 555 Pfam Zinc finger, ZZ type 47 88 IPR000433 GO:0008270
Tsu08g03419 555 MobiDBLite consensus disorder prediction 177 191 - -
Tsu08g03419 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Tsu08g03419 555 MobiDBLite consensus disorder prediction 425 443 - -
Tsu08g03419 555 ProSiteProfiles SWIRM domain profile. 468 555 IPR007526 GO:0005515
Tsu08g03419 555 Coils Coil 382 402 - -
Tsu08g03419 555 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 554 - -
Tsu08g03419 555 CDD ZZ_ADA2 48 96 IPR041983 -
Tsu08g03419 555 MobiDBLite consensus disorder prediction 216 247 - -
Tsu08g03419 555 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Tsu08g03419 555 CDD SANT 108 150 IPR001005 -
Tsu08g03419 555 SMART zz_5 44 88 IPR000433 GO:0008270
Tsu08g03419 555 MobiDBLite consensus disorder prediction 1 39 - -
Tsu08g03419 555 MobiDBLite consensus disorder prediction 201 215 - -
Tsu08g03419 555 SUPERFAMILY RING/U-box 48 110 - -
Tsu08g03419 555 MobiDBLite consensus disorder prediction 453 475 - -
Tsu08g03419 555 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Tsu08g03419 555 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Tsu08g03419 555 Gene3D - 102 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03419 Tsu-Chr8 52010583 52015290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03419 1 553 EF-hand Containing Proteins AT3G07740 46.816 4.07e-165 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu08g03419 Myb_DNA-binding 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03419 K11314 - gmx:100815514 897.886