Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03415 ATGACTTCATTAGCTACGAAAAACCTATGGATTAGGAAACAACAATGTCCTTGTGGAGATTGGAAGTGTTACATTACATATGAGTGTGATTCTGAGGAGGGTTCGGTAGCACCGGAATCGGTGAAAGAAGATAAAATGTTATCCTGTAGAGCTATGATTACCCCTTATGTTGGAATGGTGTTTAAGAGTGATGATGAAGCTTTTGAACATTATGGTAATTTTGCTAGGAAAAGTGGTTTTTCTATTAGGAAGGAAAGATCTAGAATTAGTCCTCAGTTAGGTGTTTATAAGCGTGATTTTGTTTGTTACCGATCAGGGTTTGCACCGGTTAAGAGGAAGGCTAATGGTGAACATCAGAGAGATAGGAAATCGGTGAGGTGTGGATGTGATGCTAAAATGTATCTATCCAAGGAGGTTGTTGACGGTGTTTCTCAATGGTTTGTTGTTCAGTTTAGTAATATACATAATCACGAGCTTTTGGAAGATGATCAAGTTCGTCTTTTACCTGCGTATAGGAAAATTCACGAAGCTGATCAAGAGCGTATATTGTTGCTTTCGAAAGCCGGGTTTCCGATACATCGGATAGTGAAAATGCTTGAGGTTGAAAAAGGGATTCAAGGCGGACATTTGCCTTTCTTGGAAAGGGATGTGAGGAACTTTGTCCAAAATCGCAAGAAGATTGTTCAAGAGAATGAGGCATTGCTAAGtgagaaaagagaaaatgatgttttGGAACTTCTTGAGGTGTGCAAAGCAATGAAAGAAGCTGATGTTGAGTTTGTTTATGATTTTACGGTCGATGAGAATGAGAAGGTTGAAAATATAGCTTGGTCATACGGTGATTCTGTTAATGCAAATGTCATGTTTGGtgatgtaatttattttgacactTCTCATCGATCGATCACTTATGGATTGCTTTTTGGAGTGTGGTTTGGTATTGATAACTGCGGTAGAACCATTTTTTTCGGTTGTGTTTTATTGCAGGATGAAACACCACAATCCTTCGCATGGGCGTTACAGGCATTTCTCCGGTTCACGAGAGGAAGATGTCCACAAACAATTCTATCTGATCTTGATCCCGGTCTTAGAGACGCCGTTAGAAATGAATTTCCAGGAACTAAACATGTCATTCCAGTGTGGAATATTATAAACAAGGTATCAAGTTGGTTTTCTCTTCCACTTGGATCTCGTTATGCCGAATTTAAATCCGAGTTTAATGCCTTATTTAATATCGAGAATACTGAGGAATTTGAACTTCAGTGGAGCCAAATGATTTCTGTTTTTGGACTTGATTCAGATAAACATATTGATTTACTGTATTCTGTTCGAGCCTCCTGGGCACAACCCTATGTGAGAGGTTATTTTTTGGCTCGAATGGCGACAACGGCTTATTCCAAGTCTATAGATGCATTTTTGAAAGGAATCTTCACTCAACATACATGTTTGCGTAGCTTTTTTGAACAGGTTGGCATTTCTGCAAATTTCCAACGTCAGACACATCAGGAGACTCAATTTACAAATCTTAGAACTTGCATACCAATTGAAGAGCATGCACGGAGCATTCTCACACCTTATGCTTTCAATGCTTTACAACAAGAGTTATCGCTGGCAATGCAATATGCTACATCTGAAATGGCCAATGGATCATATATTATACGACACTTCAAAAGGTTGGATGGAGAGTGGCTTGTGTTCTGGCTACCAGAAGACGAACAGATACACTGCTCATGCAAGGAATTTGAATCGTCAGGAATATTATGCAGACATGCTCTTCACGTACTTGTTATAAAGAATTACTTTCAGCTTCCTGACAAATACTATTTAAGTAGATGGCGCCGCGAATGTTCTTTACTTGTTGAGGACGAGCATAACAACCAAAGTATTAATGGTGGGGAATGGTTTCAAGAATATCAATCTCTAATGGAAACTTTGTTTTCAGAATCATCAATGACAAAGGAGCGATCTGACTTTGTTCGCAAAGAACTGACAAAAGAACTTAATAGGATTCTTAATGAGGTTAGAAATCTGCCTGAGACTGATGAAGTCTGCAACATGAACATGACGGTTTCGCCAAATAGCTAG 2085 0.3832 MTSLATKNLWIRKQQCPCGDWKCYITYECDSEEGSVAPESVKEDKMLSCRAMITPYVGMVFKSDDEAFEHYGNFARKSGFSIRKERSRISPQLGVYKRDFVCYRSGFAPVKRKANGEHQRDRKSVRCGCDAKMYLSKEVVDGVSQWFVVQFSNIHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLEVEKGIQGGHLPFLERDVRNFVQNRKKIVQENEALLSEKRENDVLELLEVCKAMKEADVEFVYDFTVDENEKVENIAWSYGDSVNANVMFGDVIYFDTSHRSITYGLLFGVWFGIDNCGRTIFFGCVLLQDETPQSFAWALQAFLRFTRGRCPQTILSDLDPGLRDAVRNEFPGTKHVIPVWNIINKVSSWFSLPLGSRYAEFKSEFNALFNIENTEEFELQWSQMISVFGLDSDKHIDLLYSVRASWAQPYVRGYFLARMATTAYSKSIDAFLKGIFTQHTCLRSFFEQVGISANFQRQTHQETQFTNLRTCIPIEEHARSILTPYAFNALQQELSLAMQYATSEMANGSYIIRHFKRLDGEWLVFWLPEDEQIHCSCKEFESSGILCRHALHVLVIKNYFQLPDKYYLSRWRRECSLLVEDEHNNQSINGGEWFQEYQSLMETLFSESSMTKERSDFVRKELTKELNRILNEVRNLPETDEVCNMNMTVSPNS 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03415 694 PANTHER FAR1-RELATED SEQUENCE 10 ISOFORM 1 27 682 - -
Tsu08g03415 694 Pfam FAR1 DNA-binding domain 70 160 IPR004330 -
Tsu08g03415 694 ProSiteProfiles Zinc finger SWIM-type profile. 566 599 IPR007527 GO:0008270
Tsu08g03415 694 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 682 IPR031052 GO:0006355
Tsu08g03415 694 Pfam MULE transposase domain 292 385 IPR018289 -
Tsu08g03415 694 SMART 26again6 574 601 IPR006564 GO:0008270
Tsu08g03415 694 Pfam SWIM zinc finger 565 594 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03415 Tsu-Chr8 51977386 51980652 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu08g03415 MULE 2.2e-13 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03415 - - gmx:100817107 1211.44