Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03398 ATGGGAAATGTCAATGGAAGAGAAGAAGATTTCAACGGCACAGTATCAGAAATTTCATCAGAAGAAGATGGAGGAAGAGAAAGAGAGGGTGGTTTTGACACTGTAAGTAGCGATTGCATGTCTACTCCTGACGGGGTTGTTGAAAATCCTTCACCTTCTGAATTAATGGGTCATTCTCCACCTGCTAGCCCTAGAACAACTCAATCTCCACTCATGTTTTCTCCTCAAGTTCCGGTGGTTCCACTACAAAGACCTGATGAGATGCAGGTTCCAAACCCTTCTTGGATGCAAACTACTTCAGGGTATGAAGATATGTTTAGTGAAGTTGGAATTCCGACGATGATTACTTGGAGTTATGATGGTAAAGAAGTTGCTGTGGAGGGATCATGGGATAATTGGAAAACAAGACTGCCATTGCAGAGATCAGGAAAGGACTTCACTATAATGAAGGTGCTGCCATCTGGTGTTTATCAGTTTAGATTTATCGTGGATGGACAGTGGAGGTACACACCTGACTTGCCTTGGGCTAAAGATGACGCTGCCAATACTTACAACATTCTGGACTTGCAGGATTACGTTCCTGAAGACATTGAAAGCATTTCTAGTTTCGTACCTCCTAAATCACCAGACTCTAGTTACAACAACTTACACCTAAGTTCTGAAGATTATGCAAAGGAGCCGCCATTGGTTCCTCCATTCATGCAAATGACTCTTCTTAATGTTCCTTCTGCAAATATGGAATTCCAACCTCTTGTATCCAGACCACAGCACGTCGTGCTCAATCATCTCTACATGCAGAAAGGAAAAAGCAGCCCTTCAGTGGTTGCACTCGGGACGACTCATCGTTTTGGAGCCAAATATGTCACTGTGGTGATGTACAAGTCTTTGCAGAAGTAA 897 0.4314 MGNVNGREEDFNGTVSEISSEEDGGREREGGFDTVSSDCMSTPDGVVENPSPSELMGHSPPASPRTTQSPLMFSPQVPVVPLQRPDEMQVPNPSWMQTTSGYEDMFSEVGIPTMITWSYDGKEVAVEGSWDNWKTRLPLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYTPDLPWAKDDAANTYNILDLQDYVPEDIESISSFVPPKSPDSSYNNLHLSSEDYAKEPPLVPPFMQMTLLNVPSANMEFQPLVSRPQHVVLNHLYMQKGKSSPSVVALGTTHRFGAKYVTVVMYKSLQK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03398 298 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 298 - -
Tsu08g03398 298 SUPERFAMILY AMPKBI-like 193 295 IPR037256 -
Tsu08g03398 298 Gene3D Immunoglobulins 106 193 IPR013783 -
Tsu08g03398 298 SMART AMPKBI_2 206 296 IPR006828 GO:0005515
Tsu08g03398 298 Pfam Glycogen recognition site of AMP-activated protein kinase 111 190 IPR032640 -
Tsu08g03398 298 MobiDBLite consensus disorder prediction 1 70 - -
Tsu08g03398 298 CDD E_set_AMPKbeta_like_N 112 188 - -
Tsu08g03398 298 Gene3D - 199 296 - -
Tsu08g03398 298 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 224 294 IPR006828 GO:0005515
Tsu08g03398 298 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 298 IPR043554 -
Tsu08g03398 298 SUPERFAMILY E set domains 111 196 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03398 Tsu-Chr8 51880804 51885019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03398 110 191 Protein tyrosine phosphatase (PTP) family AT3G01510 31.818 4.65e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03398 K07199 - gmx:100777497 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04877 04 55681641 55684690 Tsu08g03398 08 51880804 51885019 PCT