Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03397 ATGGCAGAATCAGACAACGAGTCAGGAGGAGGTCAAACAGGTTGCAGAGAGCAAGATAGGTTTCTTCCAATCGCAAACGTTAGCAGAATCATGAAAAAAGCTTTACCAGCAAACGCAAAGATCTCAAAAGAAGCAAAAGAAACAGTTCAAGAGTGTGTATCAGAGTTTATAAGTTTCATAACAGGGGAAGCTTCTGATAAGTGtcaaaaagagaagagaaaaacaaTTAATGGTGATGATCTTCTTTGGGCTATGACAACACTTGGATTTGAAGATTATGTTGAACCACTCAAGATTTATTTGAGTAAATATAGAGAAATGGAAGGTGAAAAAAGTGCTATGATTGGAAGAAGTGATCATAGAGATCATGGAGTTGGTGTTTCATCTTCTATGATGATGATGGGACATAATATGTATGGATCTGGAAGTGGATCACCATCTTTTGGAAGGAGTAGCAGATAG 462 0.3615 MAESDNESGGGQTGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLSKYREMEGEKSAMIGRSDHRDHGVGVSSSMMMMGHNMYGSGSGSPSFGRSSR 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03397 153 SUPERFAMILY Histone-fold 18 123 IPR009072 GO:0046982
Tsu08g03397 153 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 21 85 IPR003958 -
Tsu08g03397 153 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 139 - -
Tsu08g03397 153 PRINTS CCAAT-binding transcription factor subunit A signature 49 67 - -
Tsu08g03397 153 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Tsu08g03397 153 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Tsu08g03397 153 ProSitePatterns NF-YB/HAP3 subunit signature. 52 68 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tsu08g03397 153 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 139 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tsu08g03397 153 Gene3D Histone, subunit A 11 129 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03397 Tsu-Chr8 51868844 51869573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03397 1 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.298 1.94e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tsu08g03397 CBFD_NFYB_HMF 9.2e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03397 K08065 - gmx:100305641 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04881 04 55707537 55708132 Tsu08g03397 08 51868844 51869573 PCT