Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03395 atggACCTCTTCGCCGCCGAACACGTCGCTCCATTTCCCGACTCCGGTGACCTTCTCTTCGCCGCCGGCCTCCTCTCCACTCACCACAATCCCCAAAAACTCCGCCCTATCAGGTCCCTCCCTCCTCCTCCCGGTTACCTCGTCGACTCTCAGTCCTCTCCTAACCCCCACCCTCCAGAAACTTCCACCAAGCCACAGGACCCGAGTGAATCCGGGTCGGGTCATTCTCAGTTACCTCCTGGTCACGAACCCGGTTCGTctttggatgatgatgatgacgacgacGATGTGGAGAATTCATCTGCAAGTACTAAAGAATTTGGCTCTAGAAAGAAAAGGAAACGGACGGAGAGAAAGCTTGAAGATTTTGTATCGAATTTGGTGAAGAGGGTGATGGAAAAGCAAGAGCAGATGCATAACGAATTGATGGAAATGATAGATAAGAAGGAAAAGGAAAGAATACAGAGAGAAGAAGCTTGGAGGCTCGAGGAGATGGAAAGAATTAAGAAGGACGAAGAAGCTAGAGCGGCAGAAAGGTCTCGTAGTTTAGCTCTCATATCGTACATTCAGAAACTATTACGTCATGAAATTCAGATTCctcaacaagaagaagaaagccAGAAACTATTAAGTCACGCAATTCAGATCTTTCAGGCAGCTGAAGGAAGCGGAAAAAGAGAAGAGGGTGACGTTGAGCTGAGCAACAACAAAAGAGATTTCAACGGCAACCTGAGTAACAATAGATGGCCAGTTGTggtaaacaacaacaaaagagaTTTCAACGGTGATCCGTGTAGCAATAGATGGCCAGATGTGGAAGTACAAGCGCTCATAGCAGTAAGAACGGCATTGGAACACAAGTTCGGTCATATGGGATCGAAAGGATCAATATGGGAGGAGATATCAGATGCAATGCGAGATAGAGGATACAATCGTTCTGCAAAGAAGTGTAAGGAGAAATGGGAAAACATCAACAAGTACTATAAGAGGACAATGGGAAGCGGCAAGAAACGGCCTCTAAATAGTAAAACTTGTCTTTACTTCGACGAATTGGACAATCTGTATCGAAATGGATCCTCCAACAGCCTTGGAAATGCATTAACCATCACCAACAATGTTTCCATTAGCGAAGAAAATCTGTATAGAAATGAATCCTCCAACAGCCTTGGAAATGCATTAGCCATTACCAACAATGTTTCCATTAGCGAAGAAAAAGAGCCGGGTGAAATTTGA 1233 0.4274 MDLFAAEHVAPFPDSGDLLFAAGLLSTHHNPQKLRPIRSLPPPPGYLVDSQSSPNPHPPETSTKPQDPSESGSGHSQLPPGHEPGSSLDDDDDDDDVENSSASTKEFGSRKKRKRTERKLEDFVSNLVKRVMEKQEQMHNELMEMIDKKEKERIQREEAWRLEEMERIKKDEEARAAERSRSLALISYIQKLLRHEIQIPQQEEESQKLLSHAIQIFQAAEGSGKREEGDVELSNNKRDFNGNLSNNRWPVVVNNNKRDFNGDPCSNRWPDVEVQALIAVRTALEHKFGHMGSKGSIWEEISDAMRDRGYNRSAKKCKEKWENINKYYKRTMGSGKKRPLNSKTCLYFDELDNLYRNGSSNSLGNALTITNNVSISEENLYRNESSNSLGNALAITNNVSISEEKEPGEI 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03395 410 MobiDBLite consensus disorder prediction 31 118 - -
Tsu08g03395 410 CDD GT1 267 331 - -
Tsu08g03395 410 PANTHER - 63 378 - -
Tsu08g03395 410 ProSiteProfiles Myb-like domain profile. 267 325 IPR001005 -
Tsu08g03395 410 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 63 378 - -
Tsu08g03395 410 Coils Coil 132 152 - -
Tsu08g03395 410 Pfam Myb/SANT-like DNA-binding domain 267 354 IPR044822 -
Tsu08g03395 410 SMART sant 265 327 IPR001005 -
Tsu08g03395 410 Gene3D - 269 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03395 Tsu-Chr8 51855824 51858151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03395 112 361 Trihelix Transcription Factor Family AT5G47660 43.028 3.18e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu08g03395 Myb_DNA-bind_4 1.5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03395 - - mtr:MTR_2g026725 444.891