Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03386 ATGTCGACCGGAAGGAAAACTCGGGGCCGCCAAAAGGTTGCcatgaaaaaaattagtaatgaGAGCAACCTACAAGTGACGTTTTCGAAGCGTCGCAGCGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACTCTCTGTGGTGCAGAAGTTGCGCTCGTCATTTTTTCACCTGGTGAGAAGGTATTTTCCTTTGGTCACCCCAATCTTGATGTGGTCATAGATCATTATCTCTCGCATGTCCCACCTCAAAACCATGGTGTCATGCAATTCATTGAGATTCAACGTAGCGCCAATGTGCGTCAGCTAAATACTCAGCTGACTCATATCAACAATATGTTGGACAATGAGAAGAGGCGTCATGATGAGCTGAGTCATCTACACAAATTGTTTGAGGATCAATATTGGTGGGCTTGTCCCATTGATGGGATGAATCAGGGTGAACTTGAATTATTCAAGAACACAATGGAGGATTTTAAGAAACGTATTGATCAACAAGTTGATATGCTTGCAATTCAGGGTCCTCCTACCCAACTCCAACAATTTTTTGTTGGAAATGGTTCATCTCCTACCATGCCTTTTGTTCATCAGTCAAATGCTCAAATGATTCCGGAACAATTGTTTCAAAACCCTATGTTGCAACCCCATTTGTTTGGTTTCAACAATATGGGAGGAGGAGGGGGAGGATATGGATTCTTTTGA 699 0.4235 MSTGRKTRGRQKVAMKKISNESNLQVTFSKRRSGLFKKASELCTLCGAEVALVIFSPGEKVFSFGHPNLDVVIDHYLSHVPPQNHGVMQFIEIQRSANVRQLNTQLTHINNMLDNEKRRHDELSHLHKLFEDQYWWACPIDGMNQGELELFKNTMEDFKKRIDQQVDMLAIQGPPTQLQQFFVGNGSSPTMPFVHQSNAQMIPEQLFQNPMLQPHLFGFNNMGGGGGGYGFF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03386 232 CDD MADS_MEF2_like 9 79 IPR033896 GO:0000977|GO:0045944
Tsu08g03386 232 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Tsu08g03386 232 Gene3D - 87 174 - -
Tsu08g03386 232 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu08g03386 232 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu08g03386 232 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu08g03386 232 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 165 - -
Tsu08g03386 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tsu08g03386 232 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tsu08g03386 232 PANTHER MADS BOX PROTEIN 8 165 - -
Tsu08g03386 232 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Tsu08g03386 232 Coils Coil 99 119 - -
Tsu08g03386 232 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03386 Tsu-Chr8 51748543 51749241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03386 5 188 Type I MADS-box Gene Family AT5G60440 48.663 1.01e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu08g03386 SRF-TF 2.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03386 - - mtr:MTR_1g105905 268.855