Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03381 ATGGAAAACTTCAGAGATGCCTACAGAGATAACCATGTATCTTCAACTGAAAGTGAGTCATCCGACGCGTCTGATGCTGAATATGAAtctagtgatgatgatgaagatggtaATGATGTTGCATCGTCTTCACATCAAAGTTCAGATGATGAATATGTTGCTGATAATGACATTCACGATGATGAGGATGCGGTCCAAGCAGAGGGGTCAAATAACCATGCAATTGTATGTGGTAGTCTGGTGAATGTTAAATCTGTTACCGCTGATCAAATTCGTGCTATGGAATTTGGAAGTGTGCTTGAAgcatatcatttttattatcaGTATGGTAAATGTCATGGTTTTGGAGTGAGGAAAAGCGATATTAGGAAAAAATTGACCGAAGATGGTGAAGTGCTAATATTAATGAGGCAGTTTGTGTGCAGTAATCAAGGGTTAAGAAGCTTGAAGCACTTATCTAGGAAAAACAGGTTAAGAGATCACCGTCGTCTGACCCGTACTGATTGTTTGGCTAGGATCCGACTTGTCTACAGACCTAAAAAAGGCACCTATGCAGTGTCGGTGTTTCACGAGACTCATAACCATGAATTAACTCCATCAAGCAAATCATTCCAGTGTTCGTGTAGAATGTTCGAGTCTCGCGGACTTCCATGTTCTCACATCTTTTATGTCATCAAGGAAGAGCATATTGATCACATTCCGGATAGTTTGGTTTTGTCACGTTGGACAAAGGATGCCAAAGTTGGGTTGTTCAACATGGCTTATGATGGGGATGGGGATGGGGACCTACATAAAAGTTATATCGAGCAAGCTCATTTTGGTGCTTTTTGTTCTAGTTTTACTATTTTTTGCAGGGAAGTTTCAAAAAAGGAAGGTGTTTACGGGGACGTAATGGATGACATTATGAAACTACATCAAAATACTGTTCAAAGTAAAAATACTGGCAAGGACAAGCACGGTCTGGCTGAAAAAGATAATGACTCAACTGCGTCTTCACCTAATGTGAAAGGCAAAAAAAGCCTTCTGGAAAGGCGTCCACCGACTacagttgttgaaaggaaagcAATGACATTAAAGGTATTAGAGGCTATCCGTGCATCCACCTCATCAGCACCACCACCGAAATCGAAATTAAACAAATCAAGTGATGAATCCTTAAGTGAACTAACTTTAACTGAAATTAAGAAAGGTGTTCTGTGTCGACCAGAGGAAGATGGTGATAGTGATTTTTACCTTAATTATCATCCATCTGCAACTATTGGATATGAAGGgtgtatgtttgattttagCATTCCTGACTGGATGCCGATGACGTTTAGACCCACCAAATCAATGGGTCTGAACGACCTGTGTGCGTACACAGCCGCTTACATATTTAAGCCTGATTATGCAGAATTGATTGGCCGGGAGGTTTTGGTCAAAACAACTTTGAAAGTCATTGGAGACAGGAAAGCTTTTAAATCGCTTATTCCACGAACTGCCGTAGACCAGGAGATACTTAATCTTGTGGTGGCGCGACAAAATTGGCTGATTGACACAGTTGGTTCCAAGAAGTCGGTTTGGTATATGCCAACCGAGTTCGCGGTGATTACTACAACTAAACCGATTTAA 1611 0.3911 MENFRDAYRDNHVSSTESESSDASDAEYESSDDDEDGNDVASSSHQSSDDEYVADNDIHDDEDAVQAEGSNNHAIVCGSLVNVKSVTADQIRAMEFGSVLEAYHFYYQYGKCHGFGVRKSDIRKKLTEDGEVLILMRQFVCSNQGLRSLKHLSRKNRLRDHRRLTRTDCLARIRLVYRPKKGTYAVSVFHETHNHELTPSSKSFQCSCRMFESRGLPCSHIFYVIKEEHIDHIPDSLVLSRWTKDAKVGLFNMAYDGDGDGDLHKSYIEQAHFGAFCSSFTIFCREVSKKEGVYGDVMDDIMKLHQNTVQSKNTGKDKHGLAEKDNDSTASSPNVKGKKSLLERRPPTTVVERKAMTLKVLEAIRASTSSAPPPKSKLNKSSDESLSELTLTEIKKGVLCRPEEDGDSDFYLNYHPSATIGYEGCMFDFSIPDWMPMTFRPTKSMGLNDLCAYTAAYIFKPDYAELIGREVLVKTTLKVIGDRKAFKSLIPRTAVDQEILNLVVARQNWLIDTVGSKKSVWYMPTEFAVITTTKPI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03381 536 MobiDBLite consensus disorder prediction 1 51 - -
Tsu08g03381 536 MobiDBLite consensus disorder prediction 22 37 - -
Tsu08g03381 536 Pfam FAR1 DNA-binding domain 104 198 IPR004330 -
Tsu08g03381 536 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 204 249 IPR031052 GO:0006355
Tsu08g03381 536 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 204 249 - -
Tsu08g03381 536 MobiDBLite consensus disorder prediction 308 348 - -
Tsu08g03381 536 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 71 202 - -
Tsu08g03381 536 SMART 26again6 204 231 IPR006564 GO:0008270
Tsu08g03381 536 ProSiteProfiles Zinc finger SWIM-type profile. 184 229 IPR007527 GO:0008270
Tsu08g03381 536 MobiDBLite consensus disorder prediction 1 16 - -
Tsu08g03381 536 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 71 202 IPR031052 GO:0006355
Tsu08g03381 536 Pfam SWIM zinc finger 205 221 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03381 Tsu-Chr8 51680605 51686450 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu08g03381 FAR1 1.2e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03381 - - mtr:MTR_5g022270 182.185