Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03375 ATGTCGAGCAGAAGGAAAATTCCACGTCGCCAAAAGGTTGAGATGAGAAAGATTAGCAATGAGAGGAACCTGCAAGTGAATTTCTCGAGGCGTCGTAGCGGGCTCTTCAAGAAAGCTAGTGAGTTGTGCACTCTTTCGGGTGCAAGAATTGCTCTCATTGTTTTTTCACCTAGTGAGAAAGTATTTTCTTTTGGTCACCCCAATGTTAATACAGTCATAGATCTCTATCTCTCACGGGTCCAACCTCAAAATAATGACATCACACGATTCATTGATACTCAACATAGCGCTAATGTGCGTCAACTCAATACTGAGCTGACTCATATCAATAATATGTTGGATAATGAGAAGAGGCGTCATGATCAGTTGAGTCATGTACACAAGATGTTTGAGGATCGGTATTGGTGGGCTTGTCCCATAGATGAGATGAATCGAGGTGAACTTGAATTATTCAAGAACAAATTGGAGGACCTTAGGAAACGTATTGCTCTACATGTTGAAATGCTTGTAATTGAGGGCCCTCCTACCCAATTCCAGTCACTTTTTCATAACCCTATGTTGCATCCCCATTTGCTTGGTTTGAACAATATGGGAAGAGGATGGGGAGGAGGAGGAGGGGGATGGGGAGGATATGGACCGTCTAGATTCTTTTGA 654 0.4281 MSSRRKIPRRQKVEMRKISNERNLQVNFSRRRSGLFKKASELCTLSGARIALIVFSPSEKVFSFGHPNVNTVIDLYLSRVQPQNNDITRFIDTQHSANVRQLNTELTHINNMLDNEKRRHDQLSHVHKMFEDRYWWACPIDEMNRGELELFKNKLEDLRKRIALHVEMLVIEGPPTQFQSLFHNPMLHPHLLGLNNMGRGWGGGGGGWGGYGPSRFF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03375 217 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Tsu08g03375 217 PANTHER MADS BOX PROTEIN 8 164 - -
Tsu08g03375 217 Coils Coil 148 168 - -
Tsu08g03375 217 Gene3D - 90 169 - -
Tsu08g03375 217 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 164 - -
Tsu08g03375 217 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu08g03375 217 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu08g03375 217 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu08g03375 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tsu08g03375 217 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tsu08g03375 217 SUPERFAMILY SRF-like 10 83 IPR036879 GO:0003677|GO:0046983
Tsu08g03375 217 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tsu08g03375 217 Coils Coil 99 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03375 Tsu-Chr8 51621404 51622057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03375 5 166 Type I MADS-box Gene Family AT5G60440 45.455 5.68e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu08g03375 SRF-TF 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03375 - - mtr:MTR_1g106070 231.106