LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g03373	ATGGACTCGAAAACTAGTGCTAGAGCTCTCTCAAAACAACAACAGAAAACATCTGGGATTCAAACACCTGAGGCGAAAGACCTCAAGTTTTCCTCGCTGTCGCTTCAAAAGACAGGGAAATCTGAGTCTGAAGATTTGTCTAAGTCTTTACAGAACGCGTCAAAGCAGAATATTGGGGAAATTTATGAAAGCAAGAAGTTTGGAGGTTCAATCCAAAAGGGTTCTGCTGATTCATTGAGTAGTAAATTTGGTTCTGGTGCTTCTTCATCCGCTCTTGGCAAAGCTTCCGGAGAGAACATAGGCTCACAGGAAAGCTCTATTAATCAAGACAAGAAGACCTCAGAATATGGAAGTGTGAAGAACAGTTCGGCTTCTGCCAAAGCTAGCGATGGGGCCAGCAGTATTGCAAAGACAAGTGGTAGTGCTAAGATCAGTGACCGAGCTGATTTTGTTGAGAGTGGTAAGAGCAGTATTTGCAGAGGAAGTACAAGCAGTGACGTGAGTGATGAGAGTACTTGTAGTAGCTTTAGTAGCAGCGTAAACAAACCTCACAAGGCAAATGACATGAGATGGGAAGCTATCCAAGTGGTTAGAACTAGAGACGGAGCATTGGGTTTAGGCCACTTTAGACTTCTCAAGAGATTGGGCTGTGGAGATATCGGCAGTGTTTACCTCTCTGAGTTGAGTGGAACAAAATGTTACTTTGCAATGAAGGTGATGGACAAAGGGTCGTTAGCAAGTCGTAAGAAGTTACTTCGTGCTCAGACGGAACGGGAAATTCTTCAGTCACTTGACCACCCATTTCTCCCAACTTTGTACACTCATTTTGAGACGGAGAAGTTTTCATGCTTGGTGATGGAATTCTGCCCGGGTGGAGACCTCCATACTCTTAGGCAGAAACAACCAGGGAAGCACTTTCCTGAGCAGGCAGTAAAATTTTATGTGGCAGAGGTCCTACTGGCGATGGAGTACCTACACATGCTTGGGATTGTATACCGTGATCTTAAGCCAGAAAATGTCCTTGTTAGGGATGATGGACATATTATGCTCTCCGACTTTGACCTCTCCCTCCGATGTGCTGTTAGTCCAACCCTTGTTAAATCGTCTTCAATAGATTCGGAGCCTTTAAGAAAGAATACTGGTTACTGTGCTCAGCCTGCGTGTATTGAGCCACCGTCCTGCATTCAGCCATCATGTGTTGCTCCTACCTCATGTTTTTCACCCCGTCTCTTTTCTAGCAAATCAAAGAAAGAACGGAAGCCCAAAACTGAACTTGGCAATCAAGTTAGTCCTCTACCCGAGCTCATTGCAGAGCCAACCGATGCTCGGTCTATGTCGTTTGTCGGAACCCACGAATACTTGGCACCTGAGATAATCAAGGGTGAAGGTCACGGGAGTGCAGTTGATTGGTGGACTTATGGAATCTTCCTATATGAGTTGTTGTTTGGCAAAACTCCATTTAAGGGATCCGGGAACCGAGCCACGCTGTTTAATGTGGTAGGTCAGCCGCTACGATTTCCCGAAGCACCCGTCGTCAGCTTTGCAGCAAGGGATCTTATAAGAGGTTTGCTTGTAAAGGAACCTCAGCACAGATTGGCATATAAAAGAGGCGCAACCGAGATTAAGCAACATCCATTTTTCGAAGGTGTGAATTGGGCATTGATCCGATGTGCTACCCCACCCGAGATTCCAAAGGCTGTTGAATTTGAGAAGATACCTTCACCGGCTGCCTCTTCCGCCAGCGAAAAGACTGTTGTTAACCACATGCCAACAGCTCCTAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG	1824	0.4545	MDSKTSARALSKQQQKTSGIQTPEAKDLKFSSLSLQKTGKSESEDLSKSLQNASKQNIGEIYESKKFGGSIQKGSADSLSSKFGSGASSSALGKASGENIGSQESSINQDKKTSEYGSVKNSSASAKASDGASSIAKTSGSAKISDRADFVESGKSSICRGSTSSDVSDESTCSSFSSSVNKPHKANDMRWEAIQVVRTRDGALGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLAMEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSSIDSEPLRKNTGYCAQPACIEPPSCIQPSCVAPTSCFSPRLFSSKSKKERKPKTELGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTYGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKAVEFEKIPSPAASSASEKTVVNHMPTAPNQKGSDNYLEFDFF	607

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g03373	607	MobiDBLite	consensus disorder prediction	1	52	-	-
	Tsu08g03373	607	MobiDBLite	consensus disorder prediction	71	138	-	-
	Tsu08g03373	607	MobiDBLite	consensus disorder prediction	155	179	-	-
	Tsu08g03373	607	Gene3D	Transferase(Phosphotransferase) domain 1	293	360	-	-
	Tsu08g03373	607	MobiDBLite	consensus disorder prediction	156	179	-	-
	Tsu08g03373	607	CDD	STKc_phototropin_like	208	565	-	-
	Tsu08g03373	607	ProSiteProfiles	Protein kinase domain profile.	209	547	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu08g03373	607	Pfam	Protein kinase domain	444	547	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu08g03373	607	Pfam	Protein kinase domain	210	360	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu08g03373	607	Gene3D	Transferase(Phosphotransferase) domain 1	441	565	-	-
	Tsu08g03373	607	Gene3D	Phosphorylase Kinase; domain 1	207	292	-	-
	Tsu08g03373	607	PANTHER	FLIPPASE KINASE 1-RELATED	3	607	-	-
	Tsu08g03373	607	SMART	serkin_6	209	547	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu08g03373	607	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	330	342	IPR008271	GO:0004672\|GO:0006468
	Tsu08g03373	607	MobiDBLite	consensus disorder prediction	64	138	-	-
	Tsu08g03373	607	SUPERFAMILY	Protein kinase-like (PK-like)	183	584	IPR011009	-
	Tsu08g03373	607	PANTHER	SERINE/THREONINE KINASE FAMILY PROTEIN	3	607	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g03373	Tsu-Chr8	51603229	51607754	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g03373	42	607	AGC Kinase Gene Family	AT5G47750	77.954	0.0	868

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Tsu08g03373		Pkinase	2.6e-36	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g03373	K08286		-	gmx:100798088	1017.3