Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu08g03369 | ATGTCTTTCTATAGCCCTCCAAAGTTCATGAAGATTATCCAAAATTATGAACTCAATGTAGCAGAGCTTAGGGTTCCAAAGAAATTTGTGGAGAAATATTGGAAAAGAATACCAGATCCAATAGTCCTTAGACTTCCAAATGGTGCTCAACAAGAAATATTTTGGGTGAAACGTGATAGTGATATTTGGcttcaaaaaaattggaataaaattggaaaatttCTTAAATTTGGATATTCTGTAGTTTTTAAATACATTGGAGGATCATGTTTTCATCTTGCAATATTTGGGCTTGATCATTTAGAAATTGATTATTCTAATATTGAGTTCAAAGATGAAGTTGtgagtgatgatgatgagattAATGccAAAACCCCTGTTATGGATttggatgatgatgatcaaACTAATGTTGCTGGTCCATCTCAAAGAAGAACAAGAGcCAAAACCCCTGTTatcaattttgatgatgatgatgatcaaaCTAATGTTGCTGGTCCATCtcaaaaaagaacaaaagGTACTAAGAGAGATGTGACTAATGAGAAATTTAAGAACAATAATCCAAGTTTTGAAATTAAAGTGAGAGAGAGTACTGGTGCTCACGGCTATACACTTAGAATTCCAAAATACTTTTCAAGAACATACATGAAAGGATTCCAAGGGTTTGCATGGATAAGGGTTGGAGAGGGTAGGCCATGGGAGGACTCTTGGAAGACTTATAAAGGGTATTTGAAGAATAGTGACCTTGCATGGGTTGTAAAATGA | 768 | 0.3021 | MSFYSPPKFMKIIQNYELNVAELRVPKKFVEKYWKRIPDPIVLRLPNGAQQEIFWVKRDSDIWLQKNWNKIGKFLKFGYSVVFKYIGGSCFHLAIFGLDHLEIDYSNIEFKDEVVSDDDEINAKTPVMDLDDDDQTNVAGPSQRRTRAKTPVINFDDDDDQTNVAGPSQKRTKGTKRDVTNEKFKNNNPSFEIKVRESTGAHGYTLRIPKYFSRTYMKGFQGFAWIRVGEGRPWEDSWKTYKGYLKNSDLAWVVK | 255 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu08g03369 | 255 | Gene3D | - | 170 | 251 | IPR015300 | - | |
| Tsu08g03369 | 255 | SUPERFAMILY | DNA-binding pseudobarrel domain | 5 | 98 | IPR015300 | - | |
| Tsu08g03369 | 255 | SMART | B3_2 | 9 | 99 | IPR003340 | GO:0003677 | |
| Tsu08g03369 | 255 | CDD | B3_DNA | 7 | 96 | IPR003340 | GO:0003677 | |
| Tsu08g03369 | 255 | Gene3D | - | 3 | 99 | IPR015300 | - | |
| Tsu08g03369 | 255 | PANTHER | B3 DOMAIN-CONTAINING | 5 | 241 | - | - | |
| Tsu08g03369 | 255 | PANTHER | TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED | 5 | 241 | - | - | |
| Tsu08g03369 | 255 | MobiDBLite | consensus disorder prediction | 153 | 177 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu08g03369 | Tsu-Chr8 | 51577275 | 51579925 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu08g03369 | 7 | 230 | B3 DNA Binding Superfamily | AT3G18990 | 25.442 | 3.81e-19 | 84.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu08g03369 | - | - | mtr:MTR_1g035620 | 219.164 |