Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03332 ATGGAGAAATCACAACACCTGGTAGACGAAAACTTCCCACTATTCAAACCATATCGGAAACCCTCCATAAACCCTTCACAGCCTTCTTCAAATGCCAATAAACCTAAAGACTCCGTAATCTCTCAAAACATCCCTAAAGACGCCGCCTCCTTCTCAGACCTCGGACTTTCAGAATGGGCGGTAAAGACTTGCAATGAGCTTAGAATGCAGAAACCTCGCCGTGTTCAGCAACATTGTATCCCCAAGGTTCTGGAAGGCCGTCATGTAATTGGTATCGATCATACTGGTAGCGGTAAAACAGTGGCGTTTGCGCTTCCTATTCTCCAGCGTCTTGCTGAGCATCCATTTGGTGTTTTTGCTCTGGTGCTGACGCCAACGCACGAGCTTGCATTTCAGCTAGATGAGCAGTTTCGTGCCCTTGGTTCCTCATTCCACCTCCGCACTTCGGTGGTTGTTGGAGGACGCGGAGATACGGTTGAACAGGCTAAAGGGTTGCTTGCCAGACCCCACATTGTTATTGCTACTCCTGGGAGGATCAAGGACTTGCTCCAGGATAATCACATTGCTCATGTTTTCTCTAAGACTAAGTTCCTTGTTTTGGATGAAGCAGACCGACTCCTGGATGTTGGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCAGAAAAGCGGCAAAACCTGTTCTTTTCTGCAACCACAACAAGTAATCTGCAAAAGTTGTGTACGCGTTACCAAGATAAGCTGTATGCATTTCAGGCTTATGAAGGGTTTAAAACAGTCGAAAAGCTTACTCAACAAGTTATATTCATCCCTAAAAATGTGAAGGACGTATATTTGTTATACATCTTGTCTAAAACGAAAGAAATGGGTATTCGATCTGCCATTGTATTTGTCAACACATGCAGAGATTGTCATCGTTTAAATTTAATGTTGGAAGTGCTTGATCAAGAAGCTGGAGCTCTATATTCACTAAGATCACAGGCTCAAAGGCTCGAAGCACTTCATGAATTTAAATCAGGAAAGGTTCCTATATTACTAGCAACTGATGTTGCTGGCCGTGGTTTGGATATTCCTACAGTAGACCTTGTTATCAATTATGATGTTCCAAGGGTTCCACAAGATTATATTCATCGTGTAGGTCGTACTGCAAGAGCAGGTAGAGGGGGACTCGCTTTGAGCCTTGTCACGCAGCATGATATTGATCTCATTGGTAAAATAGAGGGCCTTATCGAAAAGAATCTTGAAAAGATTGAATATAAAGAAACTGAGGTGCTTTCTCTGATGAAAAAGGTTTTTAGTGCTAAGAATGTTGCAGAAATGAAGATGATGGATGACGGTTTTGACGAAAAAGCAGAAAAGCGGAAAAACCAGAAACTGAAAATGCTAGCAGAGAAAGGATTATTAAAGGAAACaaATTCTGAAAATGAATTGGTTCAAGTGGTAAGGAATAACTGGTCGTGA 1467 0.4213 MEKSQHLVDENFPLFKPYRKPSINPSQPSSNANKPKDSVISQNIPKDAASFSDLGLSEWAVKTCNELRMQKPRRVQQHCIPKVLEGRHVIGIDHTGSGKTVAFALPILQRLAEHPFGVFALVLTPTHELAFQLDEQFRALGSSFHLRTSVVVGGRGDTVEQAKGLLARPHIVIATPGRIKDLLQDNHIAHVFSKTKFLVLDEADRLLDVGFQEELKFIFQCLPEKRQNLFFSATTTSNLQKLCTRYQDKLYAFQAYEGFKTVEKLTQQVIFIPKNVKDVYLLYILSKTKEMGIRSAIVFVNTCRDCHRLNLMLEVLDQEAGALYSLRSQAQRLEALHEFKSGKVPILLATDVAGRGLDIPTVDLVINYDVPRVPQDYIHRVGRTARAGRGGLALSLVTQHDIDLIGKIEGLIEKNLEKIEYKETEVLSLMKKVFSAKNVAEMKMMDDGFDEKAEKRKNQKLKMLAEKGLLKETNSENELVQVVRNNWS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03332 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 406 IPR027417 -
Tsu08g03332 488 Pfam DEAD/DEAH box helicase 74 242 IPR011545 GO:0003676|GO:0005524
Tsu08g03332 488 MobiDBLite consensus disorder prediction 22 39 - -
Tsu08g03332 488 Gene3D - 260 484 IPR027417 -
Tsu08g03332 488 CDD DEADc_DDX49 51 242 - -
Tsu08g03332 488 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 80 253 IPR014001 -
Tsu08g03332 488 PANTHER RNA HELICASE 48 477 - -
Tsu08g03332 488 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 49 77 IPR014014 GO:0003724
Tsu08g03332 488 Pfam Helicase conserved C-terminal domain 279 388 IPR001650 -
Tsu08g03332 488 CDD SF2_C_DEAD 265 397 - -
Tsu08g03332 488 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 280 427 IPR001650 -
Tsu08g03332 488 SMART helicmild6 307 388 IPR001650 -
Tsu08g03332 488 SMART ultradead3 68 268 IPR014001 -
Tsu08g03332 488 Gene3D - 20 253 IPR027417 -
Tsu08g03332 488 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 48 477 - -
Tsu08g03332 488 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 199 207 IPR000629 -
Tsu08g03332 488 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03332 Tsu-Chr8 51046903 51050073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03332 50 401 Eukaryotic Initiation Factors Gene Family AT3G13920 34.091 1.28e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03332 K14778 - gmx:100798597 670.233