Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03331 ATGTATCACCCAACGAATGTTCCTGATTCGAGTTTAATTGGAAGCAATTCATTGGTTCATGGTCAGCACATAGATTCTGGTAGGAGCACAATGGATCCTGGTAATGGAGGAAACAGCCTCGCCAACAACTCCAATCTCAACTCAAAACAACGTTTACGCTGGACACATGAGCTACATGAACGCTTTGTTGATGCTGTGGCTCAACTTGGTGGGCCAGATCGTGCCACACCCAAAGGTGTCCTCCGAGTTATGGGTGTACAAGGCTTAACCATTTACCATGTTAAGAGCCATTTGCAGAAATACCGACTAGCAAAATACTTACCTGACTCCTCATCTGATGAGGGGAAAAAGGCTGACAAGAAAGAAACGGGGGACATGCTTTCCAATCTAGATGGTTCATCGGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGACTTCATGAACAATTGGAGGTGCAGAGACAGCTACAATTAAGGATAGAAGCTCAgggaaaatatttgaaaaagatAATTGAAGAGCAACAGCGACTTAGCGGGGTTCTTTCACCAGGCTCTGGTGTTGCAGCACCAACTCCAGGAGATATGTGCCAACAAGAACTCGACAATAAGACTGAACCGGCAACCCCCGACCCAGAAAAAGCTGCTAAAGAACATGCACCAGCAAAGAGTCTTTCAGTTGAATCTTTCTCATCTCACCATGAACCGATGACACCGGATTCCGGTTGCCAAGTTGGTTCTCCTGCTGACAGTCCTAACGGAGAGAGATCAACTAAAAAGCAACGAGTAAGCGTGGAAGGAGCGTATTCGAAATCAGACATGGTGCTTCCACATCAGATACTGGAGTCAAGCATGCCATCATACCAGCAACAGACCACTGTTTTCCTTACTCATGATCACTTTGATCCATCTTTAGGTATGTCTACAAGAAGTGGTGAGGAATTCGACAAGCTTGGTGTCGGGAATATGTGA 987 0.4509 MYHPTNVPDSSLIGSNSLVHGQHIDSGRSTMDPGNGGNSLANNSNLNSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSPGSGVAAPTPGDMCQQELDNKTEPATPDPEKAAKEHAPAKSLSVESFSSHHEPMTPDSGCQVGSPADSPNGERSTKKQRVSVEGAYSKSDMVLPHQILESSMPSYQQQTTVFLTHDHFDPSLGMSTRSGEEFDKLGVGNM 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03331 328 MobiDBLite consensus disorder prediction 230 259 - -
Tsu08g03331 328 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Tsu08g03331 328 MobiDBLite consensus disorder prediction 211 226 - -
Tsu08g03331 328 Gene3D - 48 107 - -
Tsu08g03331 328 SUPERFAMILY Homeodomain-like 48 103 IPR009057 -
Tsu08g03331 328 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Tsu08g03331 328 Pfam MYB-CC type transfactor, LHEQLE motif 136 182 IPR025756 -
Tsu08g03331 328 MobiDBLite consensus disorder prediction 186 276 - -
Tsu08g03331 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 320 IPR044848 GO:0003700
Tsu08g03331 328 Coils Coil 139 159 - -
Tsu08g03331 328 MobiDBLite consensus disorder prediction 108 132 - -
Tsu08g03331 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 320 - -
Tsu08g03331 328 MobiDBLite consensus disorder prediction 1 46 - -
Tsu08g03331 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Tsu08g03331 328 MobiDBLite consensus disorder prediction 108 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03331 Tsu-Chr8 51001266 51005136 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03331 84 328 G2-like Transcription Factor Family AT2G01060 61.660 5.33e-88 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu08g03331 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03331 - - gmx:100786925 515.383