Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03319 ATGGGCTCGGAGAATGAAATTTCTCCGGCCGATGCTCATCGGGCACCTCCCGGTAAAGAACAACAAGCCGCCGGTGTCGGAATCCTTCTTCAGATCATGATGTTAGTTTTATCCTTCGTTCTCGGTCACGTTCTTCGTCGTAAAAAGATTTACATCATTCCTGAAGCCAGTGCTTCTCTTCTCATAGGGTTAATTGTTGGTGTTTTAGCTAATATTTCAGATACTGAAACTAAtatcagGGCTTGGTTCAATTTTCACGAAGAGTTTTTTTTCCTGTTCCTGTTACCTCCGATCATATTTCAGTCTGGTTTCAGTCTTGCACCTAAACCctttttctcaaattttggtGCAATTGTGACATTTGCTATATTTGGTACCTTTCTAGCTTCAATTGTAACGGGTGTCTTGGTTTATGTTGGTGGGCTGGTCTTCCTCATGTATAAACTACCTTTTGTCGAGTGCCTGATGTTTGGTGCTCTTATATCAGCAACCGATCCTGTTACTGTTTTGTCTATATTCCAGGAGCTGGGCACAGATGTCAATCTATATGCTTTGGTTTTTGGAGAATCTGTTTTGAATGATGCAATGGCAATTTCTTTGTACAGGACAATGTCATTGGTTAGAAATAATCCATCTGGACAAAATTTCTTCATGGTGGTTGTTAGATTTTTGGAGACTTTTGTTGGGTCTTTGTCTACAGGTGTTGGAGTTGGGTTTACATCTGCTTTGCTATTTAAGTATGCAGGCTTGGATATTGACAACCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTCTTCCCTTATTTCTCGTACATGCTGTCTGAAGGCCTTGGTTTGTCCGGTATTGTATCAATATTATTCACAGGAATTGTCATGAAGCACTATGCGTATTCAAATTTGTCACAAAGTTCTCAAAGATTTGTCTCTGCTTTTTTTGAGTTGATATCATCATTAGCAGAAACATTTATATTTATATACATGGGCTTTGACATTGCTATGGAAAAACATAGCTGGTCTCATGTTGGATTTATATTCTTCTCCATTATATTCATTGTAATTGCAAGAGCCGCAAATGTCTTCTCTTGTGCTTACCTGGTCAATCTGGTCAGACCTGCTCATCGAAAGATACCTTCAAAACACCAGAAAGCACTTTGGTATAGTGGACTTCGAGGGGCAATGGCCTTTGCCCTTGCTCTGCAATCAGTTCATGATCTTCCAGAAGGACACGGACAGACCATATTCACTGCAACTACAGCAATAGTTGTTTTGACGgtATTGCTGATTGGTGGTTCAACAGGTACCATGCTGGAAGCTCTAGATGTCATAGGTGGTGACAATCACAGCGATAGCTCTTTGGCTTCAGTTGGTCCCATCACAAATTATGGGGGGAACCATGGTTATGTTGCTCCTTCATACGAGGAGGATCTGGAGGAAGAATCGTCGTCGTCTGGGAACAAAATAAAGATGAAGCTAAAAGAATTACACAAGAGTGCTGCATCTTTTACGGCATTAGATAGAAACTATCTTACCCCATTCTTTACAAGCCAAAATGGAGATGAGGATGAAGAAGCTGAACCTCTTAATTCTTCGAGATCTTCTTTTACTTCTTCAAGATCAGGATTTCACGGCCAGAGCCCTTATTCATCATGA 1650 0.4012 MGSENEISPADAHRAPPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRKKIYIIPEASASLLIGLIVGVLANISDTETNIRAWFNFHEEFFFLFLLPPIIFQSGFSLAPKPFFSNFGAIVTFAIFGTFLASIVTGVLVYVGGLVFLMYKLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVRNNPSGQNFFMVVVRFLETFVGSLSTGVGVGFTSALLFKYAGLDIDNLQNLESCLFVLFPYFSYMLSEGLGLSGIVSILFTGIVMKHYAYSNLSQSSQRFVSAFFELISSLAETFIFIYMGFDIAMEKHSWSHVGFIFFSIIFIVIARAANVFSCAYLVNLVRPAHRKIPSKHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALDVIGGDNHSDSSLASVGPITNYGGNHGYVAPSYEEDLEEESSSSGNKIKMKLKELHKSAASFTALDRNYLTPFFTSQNGDEDEEAEPLNSSRSSFTSSRSGFHGQSPYSS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03319 549 Gene3D - 151 202 - -
Tsu08g03319 549 PANTHER SODIUM/HYDROGEN EXCHANGER 6 16 525 - -
Tsu08g03319 549 MobiDBLite consensus disorder prediction 512 549 - -
Tsu08g03319 549 MobiDBLite consensus disorder prediction 528 549 - -
Tsu08g03319 549 Pfam Sodium/hydrogen exchanger family 34 437 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Tsu08g03319 549 PRINTS Na+/H+ exchanger signature 158 168 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu08g03319 549 PRINTS Na+/H+ exchanger signature 103 117 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu08g03319 549 PRINTS Na+/H+ exchanger signature 118 126 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu08g03319 549 PRINTS Na+/H+ exchanger signature 89 100 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu08g03319 549 PANTHER SODIUM/HYDROGEN EXCHANGER 16 525 IPR018422 GO:0006812|GO:0015299|GO:0016021
Tsu08g03319 549 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 32 447 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03319 Tsu-Chr8 50860740 50869588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03319 32 526 Antiporters AT5G55470 30.246 3.50e-51 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03319 K14724 - gmx:100790830 888.256