Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03306 ATGATGGAGGCTATacaacttaaaggacctattccTATTTCTTTGTTCGGCCTGGTACAGTTAAAGACAGTGATGCTGAAAAAAAACCAGCTGAATGGCACTTTAGATATTGGCAAAGCTATTAGTGACCAACTGGGACTCCTTGATTTGCAATATAATTCTATTGCAAATTTTGATCCACAAATTGATGCCTCTAAAGTGGAGATAATACTAGTCGATAATCCAGCTTGCCAAGAAACAGGAGTTGTAAAGACTTACTGCTCCATTGTGAATACAGATGACTCATATACGACGCCGCTAAATAAATGCTTTCAATATGTCTGCAAATCAACTAGAGCTCCTTCCTTCTCTTACTTGGGAAACAATACTGTGTTTGCAAAGCTAGAACTTACTCTGGTGCAGTTTTTTAAAAGTCATAAGATACCTGTGGATTCAGTTTCTTTAAGTAATCCGAGGAGGAGTACAGATAAGTATCTTGATTTGACTTTAGAAATATTTCCATCAGGCCAAGATTTTTTCAATAGAACCAGTATTTCTGGCATAGGCTTTATGCTTAGCAACCAAACATTCAAGCCTCCTCCAATCTTTGGACCATTTTATTTCATTGGTGATACGTATGAACACTATCTGAATGATTCAAGTATGTATATATATCTGATTCTGCATTCATTTAGGAATCAAATCAGTTATAGCAAGTTCTTCATTTTAAGACTATGTTTTTCTCTTGTCATTTTAGTAATAGAAAGTTCGGTGATATCTAGTAAATCTTCAAATATCGGCATCATAGCTGGAGCTGCTATTGGTTGTTGTGTGCTGGTTCTGTTATTACTTCTTGCAGTTGTTTACGGTTTCCGCCAAAAGAACAAGGCGAAAAGAGCAACCAAGAAAAACAATCTTTTTGAACAATGGGGTCCTGATGAAAGCAATAATAGCATCCCACAGTTAAAAGGTGCGAGGCGCTTCAGTTTTGAAGAGATTCAGAACTACACCAAAAACTTCTCACAACTCAATCTTATAGGATCTGGGGGTTATGGGAAGGTTTATAGGGGAACTCTTCACAATGGACAAGTAATTGCAGTAAAACGAGCTCAAAATGAATCAATGCAAGGAGGGCTGGAATTCAAAACTGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTTAGCCTTGTTGGTTTCTGCTTTGAGCAAGGAGAACAAATATTGGTTTATGAATATGTTGTAAATGGTACTTTGACAGATGCTCTTTCAGGGAAGTTAGGAATTAGATTGGACTGGATTAGAAGGCTAAAAATAGCCCTTGGTGCTGCTAGGGGCTGTATTATCTTCATGAACATGCCAATCCTCCTATCATACATAGAGACGTCAAATCGACCAACATTTTACTCGACGAAGACTTGA 1407 0.3689 MMEAIQLKGPIPISLFGLVQLKTVMLKKNQLNGTLDIGKAISDQLGLLDLQYNSIANFDPQIDASKVEIILVDNPACQETGVVKTYCSIVNTDDSYTTPLNKCFQYVCKSTRAPSFSYLGNNTVFAKLELTLVQFFKSHKIPVDSVSLSNPRRSTDKYLDLTLEIFPSGQDFFNRTSISGIGFMLSNQTFKPPPIFGPFYFIGDTYEHYLNDSSMYIYLILHSFRNQISYSKFFILRLCFSLVILVIESSVISSKSSNIGIIAGAAIGCCVLVLLLLLAVVYGFRQKNKAKRATKKNNLFEQWGPDESNNSIPQLKGARRFSFEEIQNYTKNFSQLNLIGSGGYGKVYRGTLHNGQVIAVKRAQNESMQGGLEFKTEIELLSRVHHKNLVSLVGFCFEQGEQILVYEYVVNGTLTDALSGKLGIRLDWIRRLKIALGAARGCIIFMNMPILLSYIETSNRPTFYSTKT 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03306 468 Gene3D Phosphorylase Kinase; domain 1 305 408 - -
Tsu08g03306 468 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 254 443 - -
Tsu08g03306 468 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 111 209 - -
Tsu08g03306 468 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 109 - -
Tsu08g03306 468 SUPERFAMILY Protein kinase-like (PK-like) 307 451 IPR011009 -
Tsu08g03306 468 ProSiteProfiles Protein kinase domain profile. 333 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03306 468 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Tsu08g03306 468 PANTHER - 111 209 - -
Tsu08g03306 468 PANTHER - 1 109 - -
Tsu08g03306 468 Pfam Protein tyrosine and serine/threonine kinase 337 443 IPR001245 GO:0004672|GO:0006468
Tsu08g03306 468 PANTHER - 254 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03306 Tsu-Chr8 50713622 50717282 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03306 2 459 Receptor kinase-like Gene Family AT5G49760 46.250 6.93e-116 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Tsu08g03306 PK_Tyr_Ser-Thr 1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03306 - - gmx:100782366 520.005