Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03296 ATGGCAAACCAAATCAGAGAAGAAGTAGTTTGCGTAACCGGAGCAAACGGTTTCATCGGAACATGGATAGTTAAAACCCTACTTCAAAAACACTACAAAATTCACGCCACAATCTTCCCCAATTCCGATCCATCTCATCTCTTCACACTCCACCCTGAAGCCAAATCCCGCATCACAATTTTCCCCGTCAATATCCTCGATTCAAACGCCGTCTCCTCCGCCATCAAAAACTGCTCCGGCGTATTCCATGTTGCATCTCCATGCACCCTCGAAGACCCAACCGATCCACAAAAAGAGCTTCTAGAACCTGCTGTACAAGGAACCCTAAATGTTCTAGAAGCATCTAAGCGCGCCGGTGTAAAGCGGGTTGTTCTCACTTCATCGATTTCGGCAATGGTACCAAACCCTAATTGGCCGGAGAAAACGGCAATCGATGAGACATCATGGACGGATGTCGAGTACTGTAAATTGAGGGGGAAGTGGTATCCGGTGTAG 495 0.4747 MANQIREEVVCVTGANGFIGTWIVKTLLQKHYKIHATIFPNSDPSHLFTLHPEAKSRITIFPVNILDSNAVSSAIKNCSGVFHVASPCTLEDPTDPQKELLEPAVQGTLNVLEASKRAGVKRVVLTSSISAMVPNPNWPEKTAIDETSWTDVEYCKLRGKWYPV 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03296 164 Pfam NAD dependent epimerase/dehydratase family 10 141 IPR001509 -
Tsu08g03296 164 Gene3D - 1 164 - -
Tsu08g03296 164 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 157 IPR036291 -
Tsu08g03296 164 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 162 - -
Tsu08g03296 164 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 7 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03296 Tsu-Chr8 50537937 50539232 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03296 5 164 Monolignol Biosynthesis Gene Families AT2G02400 64.596 1.70e-77 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03296 - - gmx:100795399 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03296 08 50537937 50539232 Tsu08g03296 08 50537937 50539232 ECH