Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03293 ATGGCCTGCAGCATCTCGTCTTCCCTTTTCGCTCGAAAAGGGAAGAGCTCTCTCGAAACAACATCAGAAATTAAAGGGGGCTATCTGACAGGACCTGCATCTATTGCGGCATCTTGTAGTGAAAACACCGAGGAGGGAACCTCGTTGCTGCCTCCTGAAATAACAATCGGAATTGACATTGGCACATGGCCATGTTGTATTTCTATGTGGAATGGTTCCGAAGTGGAGctttggaaaaagaaaataaatgagatgatgatgaagagatCTTGCGAAACTTCCAAAGATCATGACTTTTTACTCTCCCTAGAGAATGAGAAtacaattttaaacatgaaacaCTTTTGTAGCATAATTTTCGGTGAAGAAAATGCAAGTTTCCCGTTTCTGATGCACACCATGGACATTAAGGTTCGCCCTTTTGTTGCTGCATTTGTGAACAAACTGTGGAAATCCACTACTGCAGTAGAACTACTTGGAAAATATATGATAGAATTAAGATCCATGGTTGAAATTCATCTGAACAGACCTATAAGAAATGTAGTGTTTACGGTTCCAGTTTCATTCAGTCGATTTCAGCTACACTGGTTACATCGCGCTTGTGAGATGGCCGTTCTTAAAGTTATCAGACTGATACCTCAACCAACAGCAGTGGCTTTGTGGTATTTGGTTCATCAACTGAATTCTTCTGCTTCTGACAATGAAAGCATGAAAATTGCTCTCATTTTCAATATGGATGCAGGTTATTGTGATGTTTCTGTTATTGAAGCAGAAAAAGGAAAATTCCGAATAAAAGCCTCGAAAGGAAGTTCTATTGGCGGCGAAGATTTGCTTGGAAATATGATGTGTCATCTTTTACCTGATTTTGAAAAGATATTCGAGAGACAAGTTCACTTGAACTCAGAAATTATATCAATGGCTTTTCTTCGAAGTAGAATCCATGACGTGATTACTAAGCTTTCGTCTCAGACAAGTGTTGAGGTTGATTTAGATTTAGGATATGGTTTGAAGATATGCAAGGTTGTAACGCGGAAGGATTTTGAGGATGTTAACAAAGAGGTGTTTGAGAAGTGTGAAAAGTTAATCATCCAATGCTTGCAAGATGCAAAGATAGAAGTTGAGAATATAAATGATGTGATAATTGTTGGTGGATGTTGCAATATACCAAAGGTGAAGAATCTCGTTACGAAAATATGCAACGGAAAGGAAATTTATAAAGGTATGAATCCTTTGAATGCTGTACTTTGTGGCGCAGCAGTGGCAGGAGCTTTTGATGATGGCATTGGTAACATGGACTTGTTTGCAGCTAGTAAATGGAAAGGAAATTTATAA 1332 0.3739 MACSISSSLFARKGKSSLETTSEIKGGYLTGPASIAASCSENTEEGTSLLPPEITIGIDIGTWPCCISMWNGSEVELWKKKINEMMMKRSCETSKDHDFLLSLENENTILNMKHFCSIIFGEENASFPFLMHTMDIKVRPFVAAFVNKLWKSTTAVELLGKYMIELRSMVEIHLNRPIRNVVFTVPVSFSRFQLHWLHRACEMAVLKVIRLIPQPTAVALWYLVHQLNSSASDNESMKIALIFNMDAGYCDVSVIEAEKGKFRIKASKGSSIGGEDLLGNMMCHLLPDFEKIFERQVHLNSEIISMAFLRSRIHDVITKLSSQTSVEVDLDLGYGLKICKVVTRKDFEDVNKEVFEKCEKLIIQCLQDAKIEVENINDVIIVGGCCNIPKVKNLVTKICNGKEIYKGMNPLNAVLCGAAVAGAFDDGIGNMDLFAASKWKGNL 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03293 443 CDD HSP70_NBD 56 423 - -
Tsu08g03293 443 Gene3D - 56 422 - -
Tsu08g03293 443 SUPERFAMILY Actin-like ATPase domain 54 225 IPR043129 -
Tsu08g03293 443 Gene3D - 110 161 - -
Tsu08g03293 443 PANTHER HEAT SHOCK 70 KDA PROTEIN 8 47 430 - -
Tsu08g03293 443 PANTHER HEAT SHOCK PROTEIN 70KDA 47 430 IPR013126 GO:0005524|GO:0140662
Tsu08g03293 443 Gene3D Actin; Chain A, domain 4 274 357 - -
Tsu08g03293 443 PRINTS 70kDa heat shock protein signature 54 67 - -
Tsu08g03293 443 PRINTS 70kDa heat shock protein signature 248 258 - -
Tsu08g03293 443 PRINTS 70kDa heat shock protein signature 376 392 - -
Tsu08g03293 443 PRINTS 70kDa heat shock protein signature 408 428 - -
Tsu08g03293 443 SUPERFAMILY Actin-like ATPase domain 239 423 IPR043129 -
Tsu08g03293 443 Gene3D - 233 405 - -
Tsu08g03293 443 Pfam Hsp70 protein 56 427 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03293 Tsu-Chr8 50524831 50526162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03293 56 440 Calmodulin-binding Proteins AT5G02500 30.923 1.42e-51 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03293 K09489 - gmx:100809773 397.897