Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03291 ATGTCAACCGGTGATACCGCGTGTTCTCCAAATGATAACGACTTGGACTTGTCTCCAAGCCCTAATCTTGATATCACGATAGACGAGGGATCTCCAAACAGTGAACAACTACTTGAGGTTGTGGATGAGGGCAACGAGCTTGAGAATGGTTGCTGTCAATTGTTTGGGCTTGATGGAAGCGAACATGAAAATGGACGAGATGAAACAACTGTAGTTGACAGTCATAATGGAGAATCTCAAGGAAAAAAAGACTACACCCAACCTGTTGTGGGAATGGAGTTTGAAACTTATGATGATGCCTACAACTATTATAATAGCTATGCTAGGGAGATTGGATTTGCTATTCGGGTCAAATCTTCGTGGGCCAAACGTAACAGTAAAGAGAAGCGTGGTGCTGTCTTGTGCTGTAACTGTGAAGGTTTCAAAACAATTAAAGAAGCTAATAGTCATAGGAAAGAGACAAGAACAGGTTGTCTAGCAATGATTAGATTGAGATTAGTGGAATCTAACAGGTGGAGGGTCGATGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCCGAGAGAGCTCAAAACTCTAAATCGCATAAGAGGACGGACAGTGGAACCAAAAGAAAAGTTGAGCCATCTCTTGATGTTGAAGTACGGACTATCAAGTTATATCGACCGCCAACTGTAGATGCTTCTGGTTATGGGAGCTCAAATTCTAATGAAGGAGGAACTAGCAACAATGTTAAATTTTCCAGGAGTTTGAAACTAAAAAAAGGCGACGCAAAACTGATTTCAAATTACTTCTGCCACTGTCAACTCACGAGTCCTAATTTTTTCTATGTGATGGATCTAAATGATGATGGACAAATAAGGAACATATTTTGGATTGATTCTAGATCTAGGTCtgcatttaattattttggtgaTGTGGTTGCGTTTGACTCAACATATTTGTCAAACAATTATGAGATTCCACTTGTTGCATTTGTTGGTGTTAATCACCACGGTCAATCTGTTTTGCTAGGATGTGGTATGCTTGCAGATGAGACATTTGAAACGTATATTTGGTTATTTAGGGCATGGCTTACTTGTATGTCTGGTCGCCCTCCACAAACTATTGTTACAAACCAATCTAAGACCGTACGAAGTGCAATAGCAGAGGTTTTCCCGAGGGCTCACCATAGAATTTGCCTACTACAAGTCATGCAGAGTATCTGTGGATTTATGGTGCAGTTTCAAGAATATGAGGCATTTCAGATGGCACTAACAAAAATCATATATGACCCTAAAACAATAGATGAATTTGAAAGGGATTGGGATGCCCTGATCCAGCATTTTGGAATAAGAAATCACGAAAAGCTCCAAACCTTGCATGAGGAACGAGAACACTGGGCTCCAGTTTACTCCAAGGACACATTTTTTGCCGGAATTTATGCTTACGAAAAGGGTGAATCTGTGATTCCGTATTTCAAAGGGCATGTGCATCAACAAACTTCTTTGAAAGAATTTTTTGAGATTTATGAATTAGTTCAGCAACAGAAGCAAAAAACTGAAGCTCTTGATGATTTGGAGTCACAAAATTCAAACCTATTACTAAAAACAAGTTGCTACTATGAGCTGCAACTCTCTAAATTGTACACAAATGCAATATTCAGGAAGTTCCAAGACGAGGTGGTAATGATGTCGTCTTGTTTCTGCGTCTCACAAGTTCAAACAAATGAGTCTATAGTGACATACATGGTAAAAGAACATCAAGGAGAAGAACCAATAAGAGATGATAGGCATTTTGAAGTCCTGTATGATAAAGCGGTGGCCGAAGTACGCTGCATTTGTAGTTGCTTTAACTTCAAAGGATACCTATGCAGGCATGCCTTATATATCCTTAATTGCAATGGCGTGGAGGAAATTCCACGTCAATATATTTTGTCTAGATGGAGGAAAGATTTTAAGCGATTGTATGTACCACATCTCAACTCAGATGATGTTGATATTACCAACCCAGTTCAGTGTTTTGATCATTTGTACAAACGTGCTATGCAAGTAGTTGAAGAAGGCATGATATCCCAAAATCATTATATAGTTTCTTGGCAGACATTTAAAGAGTCTTTGAATAGGATTCGCCAGACAAGATTGAATAAATAA 2133 0.3872 MSTGDTACSPNDNDLDLSPSPNLDITIDEGSPNSEQLLEVVDEGNELENGCCQLFGLDGSEHENGRDETTVVDSHNGESQGKKDYTQPVVGMEFETYDDAYNYYNSYAREIGFAIRVKSSWAKRNSKEKRGAVLCCNCEGFKTIKEANSHRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFDPERAQNSKSHKRTDSGTKRKVEPSLDVEVRTIKLYRPPTVDASGYGSSNSNEGGTSNNVKFSRSLKLKKGDAKLISNYFCHCQLTSPNFFYVMDLNDDGQIRNIFWIDSRSRSAFNYFGDVVAFDSTYLSNNYEIPLVAFVGVNHHGQSVLLGCGMLADETFETYIWLFRAWLTCMSGRPPQTIVTNQSKTVRSAIAEVFPRAHHRICLLQVMQSICGFMVQFQEYEAFQMALTKIIYDPKTIDEFERDWDALIQHFGIRNHEKLQTLHEEREHWAPVYSKDTFFAGIYAYEKGESVIPYFKGHVHQQTSLKEFFEIYELVQQQKQKTEALDDLESQNSNLLLKTSCYYELQLSKLYTNAIFRKFQDEVVMMSSCFCVSQVQTNESIVTYMVKEHQGEEPIRDDRHFEVLYDKAVAEVRCICSCFNFKGYLCRHALYILNCNGVEEIPRQYILSRWRKDFKRLYVPHLNSDDVDITNPVQCFDHLYKRAMQVVEEGMISQNHYIVSWQTFKESLNRIRQTRLNK 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03291 710 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 705 IPR031052 GO:0006355
Tsu08g03291 710 SMART 26again6 604 631 IPR006564 GO:0008270
Tsu08g03291 710 Coils Coil 506 530 - -
Tsu08g03291 710 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 34 705 - -
Tsu08g03291 710 MobiDBLite consensus disorder prediction 60 84 - -
Tsu08g03291 710 Pfam FAR1 DNA-binding domain 102 186 IPR004330 -
Tsu08g03291 710 ProSiteProfiles Zinc finger SWIM-type profile. 593 629 IPR007527 GO:0008270
Tsu08g03291 710 MobiDBLite consensus disorder prediction 1 23 - -
Tsu08g03291 710 MobiDBLite consensus disorder prediction 60 80 - -
Tsu08g03291 710 MobiDBLite consensus disorder prediction 183 208 - -
Tsu08g03291 710 Pfam MULE transposase domain 307 400 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03291 Tsu-Chr8 50513241 50517398 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu08g03291 MULE 1.6e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03291 K17604 - gmx:100796448 1195.65