Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03290 ATGATGTCGGAGTTCGAAACCCAAAATCTTGTTACCGGCGACGCCGTCGATTCTCAACCTCCACCAGAACAACAGATGGACGATATTTCTCTGTGCTGCGATCAAATACCAGATGGAGAAGGCATTGATATTCtaaaagatgaagatgatgtaGTAATTGAATTAGATTGTCAAAATGATTTTTCTGAAGGAAGAAAGGAATTTCTCGCCCCTGCTGTTGGAATGGAATTTGAGTCGTATGATGATGCTtacaattattatatttgttatgCCAAGGAGGTTGGATTTGGTGTGAGGGTGAAAAATTCATGGTTCAAGAGAAATAGTAGAGAAAAATATGGTGCAGTGCTTTGCTGTAGCAGTCAAGGtttcaaaagaataaaagaTGCTAGCAATTTGAGAAAAGAGACAAGAACTGGTTGTCCTGCGATGATAAGGATGAGGTTAGTGGAGTCTCATAGATGGAGGATACGCGAAGTTACCCTCGAACATAACCACATCTTAGGTGCTAAGATacataaatcaattaaaaatgtGGGAAGTGGAACTAAGAAGAAGTTGTTGCCTAGTTGTTCTAATGCTGAGGTGCAAACAGTTAAGTTATATCGTGCACTTGTGATAGATGCGGGAGGTAATGGTAATTCATATTCCAATGCAAGAGACGATAAAACTTTCTCTGAATATTCTAATGAGTTGAACCTAAATAAAGGTGACGCACAAGCCATATATAATTTCCTTTGCCGTATGCAACTGACTAATCCAAACTTCTTTTATTTAATGGATTTCAACGATGAAGGGCATTTGAGGAATGTATTATGGGTTGATGCCAGGTCCAGGGCTGCATGTGGTTATTTTAGTGATGTCATTTATTTTGACAACACTTATTTGTCAAACAAATATGAAATTCCTCTTGTGGCTTTTGTTGGAATAAATCACCATGGTCAAACAGTGTTATTAGGTTGTGGGCTGCTTGCAGGTGAAACGACTGAATCATACGCATGGTTGTTTAGAACATGGGTTACATGTATGTCAGGCTGTTCTCCTCAAACTATTATTACAGATAGGTGCAAGGCTTTACAGAGTGTAATTGCAGAAATTTTTCCGAAATCTCATCATTGTTTTAGCTTGTCGTTAATTATGAAAAAAGTACCAGAAAAATTGGGAGGGTTGCAAAATTACGATGCAATCAGGAAAACATTGATTAAAGCAGTTTACGAGACATTGAAAGTGATTGAATTTGAGGCAGCATGGGGATTTATGATTCAACGTTTTGGAGTTAGCGATCATGAGTGGCTTCGTTCCTTATATGAAGACCGAGTTCATTGGGCACCGGTATATTTAAAGGACAAGttttttggtggaatgtctgcAGCACGCCCTGGTGAGAGTATTAGTCCATTTTTCGATAAATATGTGCACAAACAGACTCCTTTGAAAGAGTTTCTTGACAAGTATGAATTAGCTCTTCATAAGAAGTACAAGGAAGAAGCTTTAGCAGATATTGAATCAAGAAGCTCAAGCCCCTTACTTAAAACCAAATGTTCTTTTGAACTGCAGCTGTCTAGAATGTACACAAAAGAAATATTCACTAAGTTCCAATTTGAAGTGGGAGAAATGTTCTCTTGTTTTGGTACGACTCAATTACACGTGGATGGTCTCATCATAATCTTCTTGGTCAAAGAGCGTGTTTTGATCGATGGAAACAGACGGGAGATCAAGGATTTCGAAGTTTTGTACAGTAGATCAGCAGGTGAAGTTCGTTGTATTTGTTGTTGCTTTAATTTTTATGGATATCTATGTCGACATGCACTGTGCGTACTCAATTTTAATGGCGTGGAAGAGATTCCTCCTAAGTACATTCTTTCACGGTGGAAGAAAGATTACAAACGTCTTTATATTCCTGATCACAATTTCGGTAATTCTGATGATACTGATCGTATTCACCGGTCTAATCAGTTATTTAGAAGTGCCTTACAAGTTGTAGAGGAGGGAATACTTTCTGTAGACCATTACAATGTAGCGTTGCAGGCTTTTGAAGAATCACTTATTAAGGTCCATGATGTAGAACAGAGACATGAGTAA 2082 0.3689 MMSEFETQNLVTGDAVDSQPPPEQQMDDISLCCDQIPDGEGIDILKDEDDVVIELDCQNDFSEGRKEFLAPAVGMEFESYDDAYNYYICYAKEVGFGVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDASNLRKETRTGCPAMIRMRLVESHRWRIREVTLEHNHILGAKIHKSIKNVGSGTKKKLLPSCSNAEVQTVKLYRALVIDAGGNGNSYSNARDDKTFSEYSNELNLNKGDAQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNVLWVDARSRAACGYFSDVIYFDNTYLSNKYEIPLVAFVGINHHGQTVLLGCGLLAGETTESYAWLFRTWVTCMSGCSPQTIITDRCKALQSVIAEIFPKSHHCFSLSLIMKKVPEKLGGLQNYDAIRKTLIKAVYETLKVIEFEAAWGFMIQRFGVSDHEWLRSLYEDRVHWAPVYLKDKFFGGMSAARPGESISPFFDKYVHKQTPLKEFLDKYELALHKKYKEEALADIESRSSSPLLKTKCSFELQLSRMYTKEIFTKFQFEVGEMFSCFGTTQLHVDGLIIIFLVKERVLIDGNRREIKDFEVLYSRSAGEVRCICCCFNFYGYLCRHALCVLNFNGVEEIPPKYILSRWKKDYKRLYIPDHNFGNSDDTDRIHRSNQLFRSALQVVEEGILSVDHYNVALQAFEESLIKVHDVEQRHE 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03290 693 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6 43 689 - -
Tsu08g03290 693 MobiDBLite consensus disorder prediction 1 25 - -
Tsu08g03290 693 Pfam MULE transposase domain 288 382 IPR018289 -
Tsu08g03290 693 Pfam SWIM zinc finger 569 607 IPR007527 GO:0008270
Tsu08g03290 693 SMART 26again6 586 613 IPR006564 GO:0008270
Tsu08g03290 693 ProSiteProfiles Zinc finger SWIM-type profile. 575 611 IPR007527 GO:0008270
Tsu08g03290 693 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 43 689 IPR031052 GO:0006355
Tsu08g03290 693 Pfam FAR1 DNA-binding domain 85 168 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03290 Tsu-Chr8 50508462 50511838 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu08g03290 MULE 4.2e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03290 K17604 - gmx:100796448 1169.84