Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03282 ATGGAAGATCAAGATTTTTTAGGTTATGAAGCATTTGTTaatgttgaagaagaagaacaagaagaagatgagtTTTGCAGTTGTTGtgaaaatgatgaagaagaagaaagagaacaagatgaagaagaagatgaagaatggAAAGAAACTGAAGAGAAAGTGGTGGAAAATTTGAAGGAAGAACTTGATGAATTTTCAGTAAGAATGTATTTTAAAGGATTATCAATAACTGGAATTGAAAATTCAACTTCAGGGTTTTCTGGAATTGGAGTGTTTATGGAAAGATCATCAAAATTTTCTCCTATTAGGGTGCAAAAAAGGCTTGATTTTTATGCTGAGGAGGCTATGGTTGAATACTTAGCACTCATGGATGGTTTAGTTGAAGCTTTGCAGAATAAGATCCGTAGAGTTTATGCTTTCACAGATTCTGAATTGTTGTATAAGataacaaatgagaaaaattcGGACATGCCGCTTTTGATGGCATTGAGAGAAAGGATTCTAGAACATGCCAATAATTTTGAAACTTTTGATCTAAAGCTTATACCAAGCATTGATCTTGAGCAGCCACTGCAGTTGGCCAAAGTAGCTATGGGACTCGTCACTTTTCCTGTAACTGGCAAAATATCACTTGAGAATTGTTCTATTTGTTGCGACGACAAGCCAGTGCCAATGATGATTACCTTGAAATGTTCACACACATTCTGTTCACACTGCTTGAGATCCTATGCTGACGGTAAGCTACAATGTTGTCAAGTCCCTATAAGATGTCCTCAACCCGGATGCAGATATTGTATCTCGCCACCCGAATTTAAGTCTTTTCTTCCATTCACCTCGTATGAATCTGTGGAGAAATCCCTTTCGGAAGCAAATATTGCGCAGTCAGAAAGATTTTATTGTCCATTTCCGAATTGTTCCGTTCTCCTCGATCCTTGCGAGTGTTTATCGGCAATGGACGGTTCATCTAGTCAGTCGGACAATTCTTGTATCGAGTGTCCTGTTTGTAAGAGGTTTATCTGCATGGATTGTGGTGTTCCTTGGCATTCTTCCATGACCTGCGAAGAATACCAGAATTTGCCAGAGGAGGAGAGAGATGCTTCTGACATTACATTGCATCGTCTTGCCCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAATGATTGAGCTTTCTCAAGGTTGTTACCACATGACATGCTGGTGTGGTCACGAGTTCTGCTATTCTTGCGGTGCGGAGTACAGGGACAGCCAACAAACATGTCAATGTGCATTTTGGGATGAAGACAGCTTGACAAACACCATTCAAGAATCGGAACAATGGACATGGGAGACTTCTATGATCATGGATGCATACTCAGATCAAGAACGATCACAACTCGCACTTATACAACGGTTCCTTGACGGTGGTTTTAGTCTCAGTGACCACAATCCCTACCAATCTCCTCCTCCTCAATGTACAGAATCCTTTGTAGACCCTTTGAAGGACCTTCATCAACTTCCATGGCTAGAGAGATTTGTTTCTGTGATAAGTGACAACTACTATGACGATTACATGCAATAA 1566 0.3793 MEDQDFLGYEAFVNVEEEEQEEDEFCSCCENDEEEEREQDEEEDEEWKETEEKVVENLKEELDEFSVRMYFKGLSITGIENSTSGFSGIGVFMERSSKFSPIRVQKRLDFYAEEAMVEYLALMDGLVEALQNKIRRVYAFTDSELLYKITNEKNSDMPLLMALRERILEHANNFETFDLKLIPSIDLEQPLQLAKVAMGLVTFPVTGKISLENCSICCDDKPVPMMITLKCSHTFCSHCLRSYADGKLQCCQVPIRCPQPGCRYCISPPEFKSFLPFTSYESVEKSLSEANIAQSERFYCPFPNCSVLLDPCECLSAMDGSSSQSDNSCIECPVCKRFICMDCGVPWHSSMTCEEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELSQGCYHMTCWCGHEFCYSCGAEYRDSQQTCQCAFWDEDSLTNTIQESEQWTWETSMIMDAYSDQERSQLALIQRFLDGGFSLSDHNPYQSPPPQCTESFVDPLKDLHQLPWLERFVSVISDNYYDDYMQ 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03282 521 Coils Coil 30 68 - -
Tsu08g03282 521 Gene3D - 351 468 - -
Tsu08g03282 521 Gene3D - 67 200 IPR036397 GO:0003676
Tsu08g03282 521 ProSiteProfiles Zinc finger RING-type profile. 214 258 IPR001841 -
Tsu08g03282 521 ProSiteProfiles TRIAD supradomain profile. 210 428 IPR044066 -
Tsu08g03282 521 Pfam IBR domain, a half RING-finger domain 373 422 IPR002867 -
Tsu08g03282 521 Pfam IBR domain, a half RING-finger domain 292 353 IPR002867 -
Tsu08g03282 521 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 20 520 - -
Tsu08g03282 521 SUPERFAMILY RING/U-box 212 284 - -
Tsu08g03282 521 SMART ibrneu5 281 353 IPR002867 -
Tsu08g03282 521 SMART ibrneu5 363 422 IPR002867 -
Tsu08g03282 521 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 520 IPR031127 GO:0004842|GO:0016567
Tsu08g03282 521 Pfam Reverse transcriptase-like 84 183 IPR002156 GO:0003676|GO:0004523
Tsu08g03282 521 SUPERFAMILY RING/U-box 366 430 - -
Tsu08g03282 521 MobiDBLite consensus disorder prediction 17 48 - -
Tsu08g03282 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 295 IPR013083 -
Tsu08g03282 521 ProSitePatterns Zinc finger RING-type signature. 231 240 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03282 Tsu-Chr8 50406337 50413058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03282 66 413 C3H Transcription Factor Family AT2G19610 27.273 6.21e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03282 - - mtr:MTR_2g028870 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03282 08 50406337 50413058 Tsu08g03282 08 50406337 50413058 ECH