Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03279 ATGGAAGCCGGTGACGGTTACGGCGGAAGAACCGAAACTCAACAAACTTCCGATGAGGTCAGTCTTCAACCTGAATGGAGACGCCGAACTGCTTCCACCGGAAGGGACCAAAACCTTACTCTCCAACCAGAATGGAGACGAGGTAGGtcaatcgcttctccttctcCTTCCGGTGCTAGCGATGAAGttcaaaagaaagaagaagaacagAAAAAGGAGATTCTCTTTCAACCGGAATGGCGAAGCTCAAAGGTGAATGCTAGTAGTGTTTGGGAACCAGAATGGAGACGATCAAAGTCTACTGCTACTGCTTATCCATGGAATCAAAATTATGGTGTGAGGAAACCGGTGGGATCGAGTTCTGGTGGTGTTCAAAGAGGTAAAAACATCGATGAATCGCGGCGAAATGCTACGCCATTAGATTCTGCCGTTCCCAAACTGGAAAGACTGCAAATATCGGAAAATTTAGCTACATCATCTTGTTCACTTGAGAAAAAGGATAAAACATTGCCTATTCGGAGACCTGACAATGGTGGCACGTTAGCGGTTCTTACACGCACACTCCGTGTCAATCATTTTCCTGTTAAGTTCAATCCAGATAGTATAATATTTCATTATAATGTTAATGTCAAATCAAAGTTTTCCTCAAAAGTTGGCCAGCCTCGTAAGTTATCTAATGCTGATCTGTCCGTGATTAGAGAGAAATTGTTTTCTGATGATCCTGAGAGGTTTCCCTTGGACATGACTGCACATGACGGTGCCAAAAATATCTTTAGTGCAGTGCAGTTACCAGAAGAGACCATTACTGTGGAGATCTGTGAAGGAGAGGATGAAAAGATCACTTCATATAGTGTTACCTTGACACTTCTTAATAAACTCAGACTTTGCAAGTTAATGGACTATCTTTGTGGGCATTCATTCTCTCTTCCCAGGGATATTTTGCAAGGGATGGATGTGGTGATAAAAGAGAATCCCAATAGGTGCACAATTTCTGTGGGACGATACTTCTATCCCACAAATCCTCCTCTGGTAATGAAGGAACTTCGCCCTGGAATAATCGCAGTCGGGGGGTATCATCATAGTTTAAAACCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCGGTGGTGCCTTTCCGAAAGCAAATGTCAGTCTTAGATTTCTTGCATGAGCGTATCGAAAACTTTAGCTtaggtgaatttgaaaaattcAGGAAATATGTTGAGGAGGTGCTTATTGGATTGAAAGTTAGTGTGACTCACCGTAAATCCCAACAGAAATATAGCATTGTACGATTAACACCTACAGCTACAAGGTATGTCACTTTCCCCATAGACCATACCAAGGGATGGAAACTTGAAAAGGAAGTCAGTCTTCTTAgcttttttaatgacaaatatgaTAAAGACATTGTATACAAAGATATTCCTTGTTTAGATTTAGGGAAAGGAAACAAGAAGAACTATGTACCCATGGAATTTTGTGTTTTAGCTGAGGGCCAAAGATATCCCAAGGAGCGTTTGGATGGTGTTTCTGCAAAGACATTGGAAGCAATGGCACTAGCTCACCCAAGCGAGAGGCAGGGTGCTATACAGAAGATGGTTCAATCGAGTGACGGACCTTGCGGTGGTGATCATATTCATAATTTTGGAATGAGAGTCTGCACGACCATGACAACCATTCTAGGACGTGTAATTGGCCCCCCAGAATTGAAGTTGGGTGATCGAAATGGCAAGAATATCAAGATAACAGTGGATCTAGATAAATGTCATTGGAACCTTGCTGGAAGATCAATGGTGGAAGGCAAACCAGTTGAGCATTGGGCAATTCTTGATTTCACCAGTGTTGGGCCGTATAATAAGAAATTAAGACGAAAGGAATTCGTTGAAAAACTTATTGGTAAATACAAAAAGTTGGGTATCCTTATGCAAGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTTCAAGTCATGACTTGCTATCTGAATTACTTgaaaaaatcaacaacatttgTAAAAATAGCCAAGGTGGTCTACAATTTCTTCTGTGTGTGATGGCTTATAAAAATCCAGGTTACAAATACCTCAAGTGGATTTCCGAGACCAAAGTTGGTATAGTAACTCAATGTTGTTTGTCTAATAGTGCTAATCAAGGGGATGACAAATTCTATACTTATTTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAATGTGGAGCTCAATAATAGGCTCCCTTACTTTGAGGGTGACGAACATGTTATGTTTATTGGGGCTGATGTCAATCACCCTGGTTTTCGGGACAACAAAAGTCCATCAATTGTTGCTGTGGTTGCAACCGTTAATTGGCCCGCTGCAAATCGTTATGCAGCACGTGTTTGCCCGCAATTCAATCGAAGTgagaaaatattaaactttGGGGAGATTTGCGTTGAGCTTGTTGGTTGTTATTGGAGGGCAAATGGAGTCAGGCCagaaaaaattgttgtttttcgtGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAATGAAGAGCTACTTGATTTGAAGAGAGCATTCCAAAGATTAAATTATTTCCCAACAATCACTCATATTGTAGCACAAAAACGACATCAAACTCGATTTTTTCCAGACAGTTGGAGGGACGGGTCTTCCAGTGGCAATATTTTACCGGGAACAGTTATTGACACAAAAGTTACACACCCGTTTGAGTTTGACTTTTACCTTTGTAGTTACTATGGAAGCCTAGGTACAAGCAAGCCCACTCATTACCATGTTTTATGGGATGAACACAAGTTTACATCTGATGAATTGCAGAAACTTATATATGAGATGTGCTTCACCTTTGCGAGGTGCACTAAACCTGTATCTTTAGTCCCTCCTGTGTATTATGCTGACCTTGCTGCTTATAGAGGACGACTATACCACGAAGCAAAGATTGGGATGCAACCTAAGAAGTCAAAagcatcttcatcttctaaagaTTCATCATCGGTTCCACCAACAGCTTTGTTTGAACAGGGATTTTACAGCTTGAGGTTATCTGGAATCTCAAAAATCCATAACTAA 3087 0.3952 MEAGDGYGGRTETQQTSDEVSLQPEWRRRTASTGRDQNLTLQPEWRRGRSIASPSPSGASDEVQKKEEEQKKEILFQPEWRSSKVNASSVWEPEWRRSKSTATAYPWNQNYGVRKPVGSSSGGVQRGKNIDESRRNATPLDSAVPKLERLQISENLATSSCSLEKKDKTLPIRRPDNGGTLAVLTRTLRVNHFPVKFNPDSIIFHYNVNVKSKFSSKVGQPRKLSNADLSVIREKLFSDDPERFPLDMTAHDGAKNIFSAVQLPEETITVEICEGEDEKITSYSVTLTLLNKLRLCKLMDYLCGHSFSLPRDILQGMDVVIKENPNRCTISVGRYFYPTNPPLVMKELRPGIIAVGGYHHSLKPTSQGLSLCVDYSVVPFRKQMSVLDFLHERIENFSLGEFEKFRKYVEEVLIGLKVSVTHRKSQQKYSIVRLTPTATRYVTFPIDHTKGWKLEKEVSLLSFFNDKYDKDIVYKDIPCLDLGKGNKKNYVPMEFCVLAEGQRYPKERLDGVSAKTLEAMALAHPSERQGAIQKMVQSSDGPCGGDHIHNFGMRVCTTMTTILGRVIGPPELKLGDRNGKNIKITVDLDKCHWNLAGRSMVEGKPVEHWAILDFTSVGPYNKKLRRKEFVEKLIGKYKKLGILMQEPIWYEESSMKILSSHDLLSELLEKINNICKNSQGGLQFLLCVMAYKNPGYKYLKWISETKVGIVTQCCLSNSANQGDDKFYTYLALKINAKLGGSNVELNNRLPYFEGDEHVMFIGADVNHPGFRDNKSPSIVAVVATVNWPAANRYAARVCPQFNRSEKILNFGEICVELVGCYWRANGVRPEKIVVFRDGVSEYQFDMVLNEELLDLKRAFQRLNYFPTITHIVAQKRHQTRFFPDSWRDGSSSGNILPGTVIDTKVTHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEAKIGMQPKKSKASSSSKDSSSVPPTALFEQGFYSLRLSGISKIHN 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03279 1028 Pfam Piwi domain 685 979 IPR003165 GO:0003676
Tsu08g03279 1028 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 67 1019 - -
Tsu08g03279 1028 MobiDBLite consensus disorder prediction 116 137 - -
Tsu08g03279 1028 Pfam N-terminal domain of argonaute 187 321 IPR032474 -
Tsu08g03279 1028 CDD PAZ_argonaute_like 384 499 - -
Tsu08g03279 1028 CDD Piwi_ago-like 547 981 IPR045246 -
Tsu08g03279 1028 MobiDBLite consensus disorder prediction 61 76 - -
Tsu08g03279 1028 SMART Piwi_a_2 684 982 IPR003165 GO:0003676
Tsu08g03279 1028 SUPERFAMILY Ribonuclease H-like 670 983 IPR012337 -
Tsu08g03279 1028 Gene3D - 566 747 - -
Tsu08g03279 1028 Gene3D paz domain 379 504 - -
Tsu08g03279 1028 ProSiteProfiles Piwi domain profile. 684 983 IPR003165 GO:0003676
Tsu08g03279 1028 SMART PAZ_2_a_3 384 517 IPR003100 GO:0005515
Tsu08g03279 1028 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 67 1019 - -
Tsu08g03279 1028 ProSiteProfiles PAZ domain profile. 384 500 IPR003100 GO:0005515
Tsu08g03279 1028 SUPERFAMILY PAZ domain 379 538 IPR036085 GO:0005515
Tsu08g03279 1028 Gene3D - 753 1013 IPR036397 GO:0003676
Tsu08g03279 1028 MobiDBLite consensus disorder prediction 1 76 - -
Tsu08g03279 1028 Pfam PAZ domain 393 512 IPR003100 GO:0005515
Tsu08g03279 1028 SMART DUF1785_2 330 383 IPR014811 -
Tsu08g03279 1028 Pfam Argonaute linker 1 domain 331 382 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03279 Tsu-Chr8 50380111 50385781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03279 188 1002 Eukaryotic Initiation Factors Gene Family AT1G48410 34.223 6.27e-140 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03279 K11593 - gmx:100783571 1521.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03279 08 50380111 50385781 Tsu08g03279 08 50380111 50385781 ECH