Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03276 ATGGCTAATTCAGCTGAACCCTCATCATCTTTGAGTTTTACATCATCTTCTCATTTATCGAATGGATCCATTGGTCATAACTTATGTTCTTCTAATGGCACCGATCATGCTCGAAACCTTGAGGTTATTAGTTTGAGTAAGCTTAGTTCTAATTTGGAGCAGCTTTTGATTGATTCTGATTATGATTATAGTGATGCTGAAATAGTTGTGGAGGGGATTTCGGTTAGAATTCATCGGTGTATTCTAGGTTCTAGGAGTAAGTTTTTTCATGAATTGTTTAAGAGAGGTAAAGATAAAGGATCATCAAAGAATGAAGGGAAATTGAAGTATTGTTTGAGTGATTTGTTGCCTTATGGTAAAATTGGATATGAAGCTTTTAATATATTCTTGAGTTATGTATATAGTGGTAAACTCAAGCCGTCTCCGATGGAGGTGTCTACATGTGTTGATAAAGTGTGTGCTCATGATGCTTGTGGACCGGCAATTAACTTTGCTGTGGAGTTGATGTATGCCTCTTCCATTTTCCAAATACCGGAGTTGGTATCACTTTTTCAGCGACGTCTTCTTAACTTTGTAGGGAAGGCACTTGTGGAAGATGTCATTTCAATCCTTATGGTTGGTTTCCATTGTCAATTGAATCAACTCGTTGCTCAATGTGTTGAAAGGGTGGCACGATCGGACCTTGACCAGATCTCAATCGAGAAAGAGCTTCCCCTTGAACTCTCAGAAAAAGTTAAACTGCTCCGCCGTGATCTTCAACAGGACGGGGAAAATGATACTCCTATGGTGGATGCTTTATCTCTAAAACAAATCACTAGAATACACAAGGCGTTGGACTCGGACGATGTCGAGCTTGTTAAACTTCTTTTAAACGAGTCAGACATTACTTTAGACGAAGCTGGTGCCCTCCATTACGCGGCAGCCTACTGTGACCCTAAGGTTGTTTCTGAAGTACTTGGATTGGGTCTTGCTAATGTCAATCTTCGAAATTCTCGAGGGTACACAGTGCTTCATGTTGCTGCCATGCGTAAGGAGCCTTCGATTATAGTATCGCTTCTAACAAAAGGAGCTTGTGCATCGGATTTGACTTTCGACGGTCAGAGTGCTGTTAGTATTTGTAGGAGGTTGACGAGGCCTAAGGATTATCacacaaaaacagaacaagggaaagaaacaaataaagacCGGATATGCATCGATGTTCTTGAAAGAGAAATGCGAAGGAATCCTTTGGCTGGAGATCCCTCTGTGTCTTCCCAAACAGTGGCTGATGATCTCCACATGAAGCTTCTGTACCTTGAGAACAGAGGTATGGTgtatcatatatga 1329 0.3973 MANSAEPSSSLSFTSSSHLSNGSIGHNLCSSNGTDHARNLEVISLSKLSSNLEQLLIDSDYDYSDAEIVVEGISVRIHRCILGSRSKFFHELFKRGKDKGSSKNEGKLKYCLSDLLPYGKIGYEAFNIFLSYVYSGKLKPSPMEVSTCVDKVCAHDACGPAINFAVELMYASSIFQIPELVSLFQRRLLNFVGKALVEDVISILMVGFHCQLNQLVAQCVERVARSDLDQISIEKELPLELSEKVKLLRRDLQQDGENDTPMVDALSLKQITRIHKALDSDDVELVKLLLNESDITLDEAGALHYAAAYCDPKVVSEVLGLGLANVNLRNSRGYTVLHVAAMRKEPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHTKTEQGKETNKDRICIDVLEREMRRNPLAGDPSVSSQTVADDLHMKLLYLENRGMVYHI 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03276 442 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 1 436 - -
Tsu08g03276 442 SMART ANK_2a 298 328 IPR002110 GO:0005515
Tsu08g03276 442 SMART ANK_2a 269 297 IPR002110 GO:0005515
Tsu08g03276 442 SMART ANK_2a 332 364 IPR002110 GO:0005515
Tsu08g03276 442 Gene3D Potassium Channel Kv1.1; Chain A 30 224 IPR011333 -
Tsu08g03276 442 SMART BTB_4 64 192 IPR000210 GO:0005515
Tsu08g03276 442 Pfam NPR1/NIM1 like defence protein C terminal 374 436 IPR021094 -
Tsu08g03276 442 Pfam Domain of unknown function (DUF3420) 227 275 IPR024228 -
Tsu08g03276 442 CDD BTB_POZ_NPR_plant 47 192 - -
Tsu08g03276 442 Pfam Ankyrin repeat 333 358 IPR002110 GO:0005515
Tsu08g03276 442 Gene3D - 265 406 IPR036770 -
Tsu08g03276 442 ProSiteProfiles Ankyrin repeat profile. 332 357 IPR002110 GO:0005515
Tsu08g03276 442 Pfam BTB/POZ domain 62 181 IPR000210 GO:0005515
Tsu08g03276 442 SUPERFAMILY Ankyrin repeat 263 375 IPR036770 -
Tsu08g03276 442 SUPERFAMILY POZ domain 50 190 IPR011333 -
Tsu08g03276 442 ProSiteProfiles Ankyrin repeat region circular profile. 332 357 - -
Tsu08g03276 442 ProSiteProfiles BTB domain profile. 64 142 IPR000210 GO:0005515
Tsu08g03276 442 PANTHER REGULATORY PROTEIN NPR3 1 436 IPR044292 GO:0009862|GO:2000022|GO:2000031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03276 Tsu-Chr8 50319052 50324453 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu08g03276 BTB 9.4e-12 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03276 K14508 - gmx:100217338 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03276 08 50319052 50324453 Tsu08g03276 08 50319052 50324453 ECH