Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03269 ATGTCACATCTCTATTCCTCTCTTCAAAATGCAGGGATTTATACCTTCAGAGATGATGACGAAATTCAAAAGGGAGATTGTATCTCAATATCACTGTTGCAAGCAATTGGACGATCTAGAATTTCTATTGTTGTTTTGTCTACAAATTATGCTAATTCAAGATGGTGTATGCTAGAGTTGGAGAAAATCATGGAAATTGGTAGAATGAAGGGTTTGGTGGTTGTGCCAGTATTCTATGAGGTAGATCCCTCAGAAGTACGTCGTCAGGAAGGTCTGTTTGGGAAAGCTTTTAAAGAACTTATATCAAGAATCTCAGTGGATGAATCCAGAAAGAGTATTTGGAAAAGAGATCTCCTTGATATTAGTGGCATAGCAGGATTTGTACTAATAGATCCAGAAagGAACGAAAGTGCTGACATCAAGAATATTGTTGAACATGTCACCCGTTTGCTAGATAGGACAGAGTTATTCGTTGCTGAACATCCAGTGGGTGTAGAATCTCGTGTGGAAGCTGTGACTAAGCTACTAAACATCCAAAAATCAGAAGATGTTTTACTTCTTGGAATATGGGGAATGGGGGGTACGGGTAAAACAACCATTGCCAAAGCCATCTATAATCAAATTGGGAGCCAATTTGAGCGAAGGAGCTTCCTTCTGAATATTAGGGAATTTAGGGAAACAAATATTAATCTAGTTTCGCTACAGCAACAGGTACTTTCTGATGTTTACATGACAACATCATTTAAGATACGTAACACTGAATTGgggaaaaatatattgaaggaAAGACTTTCCCAATTTAGGATACTTCTTGTGCTTGATGACGTGAATGAATTGGACCAACTAAAGGCTTTGTGTGGAAGCCGCAAATGGTTTGGTCCGGGGAGTAGAATAATCATTACAACAAGAGATCTCCATCTTCTTAGATCGTGTGGAGTTGATCAAGTGTATACAATAGAAGAAATGAACGAAAGTGAATCTCTTGAGCTATTCAGTTGGCATGCATTCAAGCAACCAAGTCCAGCAGAAGAGTTTGCTACACATTCAAAAGATGTGATTGCTTATTCTAGGAGATTGCCATTAGCACTTGAAGTCATTGGGTCCTATTTGTCTGACTGTGAACTAACAGAGTGGCAGAAAGTTTTGGAGAAACTCAAATGTATTCCCCACGATCAAGTACAGAAGAAGCTTAGAGTAAGCTTTGATGGTTTAAAAGATGTTACAGAGAAACAAATATTCCTTGATAGTGCTTGA 1254 0.378 MSHLYSSLQNAGIYTFRDDDEIQKGDCISISLLQAIGRSRISIVVLSTNYANSRWCMLELEKIMEIGRMKGLVVVPVFYEVDPSEVRRQEGLFGKAFKELISRISVDESRKSIWKRDLLDISGIAGFVLIDPERNESADIKNIVEHVTRLLDRTELFVAEHPVGVESRVEAVTKLLNIQKSEDVLLLGIWGMGGTGKTTIAKAIYNQIGSQFERRSFLLNIREFRETNINLVSLQQQVLSDVYMTTSFKIRNTELGKNILKERLSQFRILLVLDDVNELDQLKALCGSRKWFGPGSRIIITTRDLHLLRSCGVDQVYTIEEMNESESLELFSWHAFKQPSPAEEFATHSKDVIAYSRRLPLALEVIGSYLSDCELTEWQKVLEKLKCIPHDQVQKKLRVSFDGLKDVTEKQIFLDSA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03269 417 Gene3D - 149 316 IPR027417 -
Tsu08g03269 417 Gene3D - 321 405 IPR042197 -
Tsu08g03269 417 ProSiteProfiles TIR domain profile. 1 151 IPR000157 GO:0007165
Tsu08g03269 417 Gene3D - 1 148 IPR035897 -
Tsu08g03269 417 SMART till_3 1 124 IPR000157 GO:0007165
Tsu08g03269 417 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 1 414 - -
Tsu08g03269 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 415 IPR027417 -
Tsu08g03269 417 Pfam NB-ARC domain 166 391 IPR002182 GO:0043531
Tsu08g03269 417 PRINTS Disease resistance protein signature 186 201 - -
Tsu08g03269 417 PRINTS Disease resistance protein signature 263 277 - -
Tsu08g03269 417 PRINTS Disease resistance protein signature 356 370 - -
Tsu08g03269 417 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 414 IPR044974 GO:0006952
Tsu08g03269 417 SMART AAA_5 183 320 IPR003593 -
Tsu08g03269 417 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 100 IPR035897 -
Tsu08g03269 417 Pfam TIR domain 2 150 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03269 Tsu-Chr8 50241521 50243678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03269 1 417 WRKY Transcription Factor Family AT4G12020 28.810 1.07e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03269 - - cam:101511908 691.419