Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03268 ATGAATTACCCTTCTCTGTGGAGTGGAAGTTGGCGAAGCTCTTGGGCTTTTAGTTCATGTGCTGGAGTTTCCGTTTTCTGGGACATTGAGAGGCACGGAAGTGGAGATCCAGAAATATCAACCTCATCTCTAAATGTAATTGGAGAGTGTAGAGTAGCTGTCATCGTGTTTTCAAGAAATTATGCTAATTCGAGATCTTGTCTTAAAGAATTGGAGAAAATAACCAAAACCGCTGCTGTTGGTCTCATTGTTTTTCCTGTGTTCTATGACGGTGTCTATCCATTTGATGGAAGATTCCAGAATGGTATGTTTCAAAAGTGTTTTCGTGAATGTGTTGATAGAATCTCAATGGAGGAGGAAACCTCTAAAAAGGAAGACAAGTTCATGACTTGGGTGGAAACGATAAGTAAGGCTACCCAATCTCTAGGATCGACTTTTTTGTTGCACAAATACAGGAACCAAGAAGAACATATTAAGAATGTAGTTGATCGTGTTAGTACTTGTGTGCTAAACCCGAAGATAAAGTTGTATACACCGAGCACAACTTCTCGTGCACAAGATGTGATCCAACTATTGAAACAATCAAAATCTCCTCTCCTACTAGGGATATGGGGGATGACAGGGATTGGTAAATCAACCATTGCCAGAGCCATTTATCGCCAGATTAGTCCATATTTTGAGGGCAAGTGCTTTGCTCAGAGATGTCGGGGACTTCAACGTAAAAAGTTACTTCTTATACTTGATGGTGTTGATAAATTGGAGCAGCTAGAATCTTTGTGTGGAAGTCACGAATGGTTTGGCGCAGGtagcaaaataataatcacGACAAGAGATAGACGTCTACTTCAGGAACATGGAGTTGACCATATATATAGAGTGAAAGAACTGGACGAACGTGAATTGCATGAGGTTTTGGTTGCATTATGCCAGGCAACTCCACAAGAAGAGTTTGGTGAACTTGGTGAACTTTCCAGAAAGTTAGTTGCTTATTCTGGGGGACTGCCTCTTGCTCTTGAAAAACTTAACTCCTCTTTGGATGAATATGATGGACTTCACTGGAAGGTTGTGTTAAGGAGACTCAATAGAGATCCAGAACTATTAAAAGCTCTAGAAAAGAGTTTTAATGATTTGAGTGATGAAGAGAAGAAAATATTCTTTCATATAGCACGTTTCTTTATTGGGATGAACCAAAATGATGTACTTCAAACATTAAATAGGTCAACACAATCAGCAACTCTTCAAATAAGTCTCCTTGAAGACAAGAGCTTAGTAACCATTGACGAGAATAACAGGCTTCAAATGCATGTTCTTCTACAAGCTATGGCAAAGGATATCATTAAAAAGGAATCAAAGGAAGCCACgACAAAGATGTAA 1374 0.3886 MNYPSLWSGSWRSSWAFSSCAGVSVFWDIERHGSGDPEISTSSLNVIGECRVAVIVFSRNYANSRSCLKELEKITKTAAVGLIVFPVFYDGVYPFDGRFQNGMFQKCFRECVDRISMEEETSKKEDKFMTWVETISKATQSLGSTFLLHKYRNQEEHIKNVVDRVSTCVLNPKIKLYTPSTTSRAQDVIQLLKQSKSPLLLGIWGMTGIGKSTIARAIYRQISPYFEGKCFAQRCRGLQRKKLLLILDGVDKLEQLESLCGSHEWFGAGSKIIITTRDRRLLQEHGVDHIYRVKELDERELHEVLVALCQATPQEEFGELGELSRKLVAYSGGLPLALEKLNSSLDEYDGLHWKVVLRRLNRDPELLKALEKSFNDLSDEEKKIFFHIARFFIGMNQNDVLQTLNRSTQSATLQISLLEDKSLVTIDENNRLQMHVLLQAMAKDIIKKESKEATTKM 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03268 457 PRINTS Disease resistance protein signature 331 345 - -
Tsu08g03268 457 PRINTS Disease resistance protein signature 200 215 - -
Tsu08g03268 457 SUPERFAMILY "Winged helix" DNA-binding domain 366 450 IPR036390 -
Tsu08g03268 457 Pfam NB-ARC domain 235 364 IPR002182 GO:0043531
Tsu08g03268 457 ProSiteProfiles TIR domain profile. 1 169 IPR000157 GO:0007165
Tsu08g03268 457 Gene3D - 296 378 IPR042197 -
Tsu08g03268 457 Gene3D - 174 235 IPR027417 -
Tsu08g03268 457 Gene3D - 16 173 IPR035897 -
Tsu08g03268 457 SMART till_3 2 138 IPR000157 GO:0007165
Tsu08g03268 457 Pfam TIR domain 38 173 IPR000157 GO:0007165
Tsu08g03268 457 SUPERFAMILY Toll/Interleukin receptor TIR domain 21 112 IPR035897 -
Tsu08g03268 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 387 IPR027417 -
Tsu08g03268 457 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 237 449 IPR044974 GO:0006952
Tsu08g03268 457 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 230 IPR044974 GO:0006952
Tsu08g03268 457 Gene3D - 236 289 IPR027417 -
Tsu08g03268 457 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 237 449 - -
Tsu08g03268 457 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 20 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03268 Tsu-Chr8 50235877 50241475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03268 195 453 WRKY Transcription Factor Family AT5G45050 32.667 8.73e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03268 - - cam:101511908 467.618