Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03247 ATGGAGGATTCCGAAGGAGTCCTCAACTTCGATTTCGAAGGCGGACTCGATACACAACCTACCGCCGCCACCGCATCCGCCTCCGTTCCCGCACCACCGTCCGGTCCAATTATCCAACCCGATTCATTCTTACCTCCTTCTAATACTTCCAATGGTAACGCTAATGTTCCTTCTGTTACTGAACCGGTTTCTGGTGGTAATGTTCCTGGTCGACGAAGCTTTCGGCAAACGGTTTGTCGTCATTGGCTTCGTAGTTTGTGTATGAAAGGTGAAGCGTGTGGATTCTTGCATCAGTATGATAAGGCTCGGATGCCGGTTTGTCGGTTTTTTCGATTGTATGGAGAGTGTCGTGAACAAGATTGTGTTTATAAACATACTAATGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCTAATGGGCCTGATTGTCGATACAGGCATGCAAAATCTCCTGGACCTCCGCCTCCAATTGAAGAGGTCCTTCAAAAGATCCAACATTTATATTCTTACAACAACTATAACAATTCTCACAAATTTACCCAACAAAGGGGTTCTAACTATAACACTCAACAAGTTGATAAGCCTCAGTTTCCTCAAGGAAATAATTCTGCAAACCAAGCTGCGGTTGGAAAACCAGTAGCTTCAGAGTCTGGAAATGtccagcagcagcagcagcagcaacaagtTCAACAGTCTCAGCCGCAGGTTAGCCAGAACCAAGCGCAAAATCTTGCTAATGGCCAACCCAATCAAGCCAATCGAACGTCAACCCCTTTACCTCAAGGAGTATCTAGGTATTTTATTGTTAAGAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCAAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTGATTTTCTCAGTCAACCGTACTCGACACTTCCAGGGCTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGAAACTGGAAATATGCTCATGGAACGGCACATTATGGGCGGAATTTCTCCGTTAAATGGTTGAAGTTATGTGAATTGTCATTCCACAAAACTCGCCATTTGAGAAATCCATACAATGAGAACTTACCAGTGAAGATAAGCAGAGATTGTCAGGAGCTGGAACCCTCTATCGGTGAGCAGCTGGCATCCTTGCTTTATACTGAGCCAGATAGCGAACTTATGGCTATCTCAATTGCAGCAGAGTCTAAACGAGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGCAGATAATGGAGGAGAAAATCCTGATATTGTCCCATTTGAAGACAacgaagaagaggaagaggaagaaagTGATGAAGAGGATGAGAGCTTTGGTCAAGCTGTAGGTCCAGCTGTTCAAGGAAGAGGCAGGGGCAGAGGTATGATTTGGCCTCCTCACATGCACATGGGACGTGGAGCCAGACCCATGCATGGAATGCAAGGTTTTAACCCAATGATGGGCGATGGATTATCCTATGGGCCAGCTGGACCTGATGGTTTTGGTATGCCAGATCTTTTTGGCATGGGTCCCCGAGGTTTTGGTCCATATGGTCCTAGGTTCTCTGGTGATTTTGGAGGTCCCCCAGCTGCCATGATGTTCCGAGGGCGACCCTCACAACCTGGGATGTTTCCCGGTGGTGGATTTGGGATGATGATGAATCCTGGACGCGGTCCCTTTATGGGGGGAATGGGGGTTCCAGGTCCGAACGGACCAAGAGGTGGTAGGCCAGTCAATATGCCTCCGATGTTTCCACCACCTCCGCCTCCACCACAAAATATGAACCGCGTCGCTAAAAGAGATCAAAGAACAAGCGACCGGAATGATAGGTTCGGTTCAGGACCAGATCAAGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGGGGTCCTGATGATGACATGCAGTATCAACAAGGATACAAGTCACAGCAGGATGAAAGGAACGACGATAGCGAAAGTGAAGACGAGGCACCTAGGCGGTCAAGACACGGGGAGGGAAAAAAACGAAAAGGCGAAGCTTAG 2076 0.4533 MEDSEGVLNFDFEGGLDTQPTAATASASVPAPPSGPIIQPDSFLPPSNTSNGNANVPSVTEPVSGGNVPGRRSFRQTVCRHWLRSLCMKGEACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPIEEVLQKIQHLYSYNNYNNSHKFTQQRGSNYNTQQVDKPQFPQGNNSANQAAVGKPVASESGNVQQQQQQQQVQQSQPQVSQNQAQNLANGQPNQANRTSTPLPQGVSRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYTEPDSELMAISIAAESKREEEKAKGVNPADNGGENPDIVPFEDNEEEEEEESDEEDESFGQAVGPAVQGRGRGRGMIWPPHMHMGRGARPMHGMQGFNPMMGDGLSYGPAGPDGFGMPDLFGMGPRGFGPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVPGPNGPRGGRPVNMPPMFPPPPPPPQNMNRVAKRDQRTSDRNDRFGSGPDQGKSQDMLSQSGGPDDDMQYQQGYKSQQDERNDDSESEDEAPRRSRHGEGKKRKGEA 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03247 691 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 688 IPR045168 -
Tsu08g03247 691 ProSiteProfiles Zinc finger C3H1-type profile. 127 154 IPR000571 GO:0046872
Tsu08g03247 691 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 688 - -
Tsu08g03247 691 ProSiteProfiles YTH domain profile. 268 403 IPR007275 GO:0003723
Tsu08g03247 691 MobiDBLite consensus disorder prediction 443 462 - -
Tsu08g03247 691 Pfam YT521-B-like domain 268 330 IPR007275 GO:0003723
Tsu08g03247 691 Pfam YT521-B-like domain 347 402 IPR007275 GO:0003723
Tsu08g03247 691 SUPERFAMILY CCCH zinc finger 73 104 IPR036855 GO:0046872
Tsu08g03247 691 SMART c3hfinal6 129 153 IPR000571 GO:0046872
Tsu08g03247 691 SMART c3hfinal6 73 99 IPR000571 GO:0046872
Tsu08g03247 691 SMART c3hfinal6 101 127 IPR000571 GO:0046872
Tsu08g03247 691 MobiDBLite consensus disorder prediction 632 660 - -
Tsu08g03247 691 Gene3D - 69 131 - -
Tsu08g03247 691 MobiDBLite consensus disorder prediction 617 631 - -
Tsu08g03247 691 MobiDBLite consensus disorder prediction 192 263 - -
Tsu08g03247 691 Gene3D ph1033 like domains 246 408 - -
Tsu08g03247 691 MobiDBLite consensus disorder prediction 420 480 - -
Tsu08g03247 691 MobiDBLite consensus disorder prediction 592 612 - -
Tsu08g03247 691 MobiDBLite consensus disorder prediction 580 691 - -
Tsu08g03247 691 MobiDBLite consensus disorder prediction 661 691 - -
Tsu08g03247 691 MobiDBLite consensus disorder prediction 41 62 - -
Tsu08g03247 691 MobiDBLite consensus disorder prediction 11 70 - -
Tsu08g03247 691 ProSiteProfiles Zinc finger C3H1-type profile. 73 100 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu08g03247 YTH 3.7e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03247 K14404 - gmx:100787159 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03247 08 49874116 49884065 Tsu08g03247 08 49874116 49884065 ECH