Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03217 atggCACTTTCTATGCACAAAGATATTAACAATCAAATGGATGCTGGAAAATATGTTAGGTATACTCCTGAACAAGTTGAAGCTTTGGAAAGAGTTTATTCAGAATGTCCTAAACCTAGTTCATTGAGAAGACAACAACTTATAAGAGAATGTCCTATTCTTTCTAACATTGAACCTAAACAGATCAAAGTTTGGTTTCAGAATCGAAgGTGTCGTGAGAAGCAAAGAAAGGAAGCATCTCGTTTGCAGACAGTGAATAGAAAGCTATCTGCAATGAATAAGTTgttaatggaagaaaatgaCCGTTTACAGAAGCAAGTTTCTCATCTGGTTTATGAGAATGGATACATGAAGCAACAGATTCACACTGTGAGTGCTTCTGCTGCAACTACTACAGATAATAGCTGTGATTCTGTGGTAATGAGTGGTCAAAATCAACAGCAAAACCCAAATCAGCGTCCTCAAAGGGATGCAAACAACCCAGCTGGTCTTCTCGCGGTTGCTGAGGAGACCCTGGCAGAGTTCCTTTCTAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAgCCTGGTCCGGATTCTATTGGTATTGTTGCTGTTTCTCGCAATTGTAGTGGGATAGCGGCGCGTGCCTGCGGCCTTGTGAGTTTAGAGCCCACTAAGGTTGCCGAGATTCTTAAAGATCGATTGACATGGTACCGTGACTGCCGATGTGTTGATGTGTTGAGTATTGTCCCTACTGGTGGTGGTGGTACAATAGAGCTTATGTACATGCAGACTTATGCACCTACAACATTGGCCGCAGCACGAGACTTTTGGACACTGAGATACACTACTAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCATTGAATGCTTCAACTGGTGGTCCTCCGGGGCCTTCTTCGTCAAATTTCGTGAGAGCTGAAATGCTTCCAAGTGGATTTCTAATTCGACCATGCGAGGGCGGTGGATCCATTATTCATATTGTTGATCATGTTGATTTAGATGTTTGGAGTGTCCCTGAAGTTCTAAGGCCTCTCTATGAATCGTCAAAAATCTTAGCTCAGAAATTGACTATTGCAGCATTGCAACACATAAGACAGATAGCACAAGAATCAAGTGGTGAAATTCAGTATGGTGGTGGGCGCCAACCTGCTGTTTTGAGAACTTTCAGTCAGAGACTTTGCAGGGGGTTCAATGATGCTGTGAATGGATTTGTTGACGATGGTTGGTCATTGCTGGGAAATGATGGGGTGGAAGATGTGACAATAGCTGTGAACTCTTCTCCAAATAAGTTTGTAGGGTCGAATTACTCAACAATGTTCCCAACATTTGGAGGTGGTGTCTTGTGTGCCAAGGCATCAATGCTGCTGCAGAATGTTCCTCCTGCTTTACTTGTCCGATTTTTGAGGGAGCATCGATCCGAGTGGGCTGATTATGGTGTAGATGCATACTCTGCTGCTTGTCTCAAGTCTAGCCCCTATGCAGTTCCTTGTGCAAGACCTGGTGGCTTCCCCAGCAGCCAGGTCATTTTACCTCTTGCCCCTACGATCGAGCATGAGGAGTTCCTGGAGGTAGTTCGTATAGAAGGTCATGCATTTTCCCCGGAAGATGTTGCATTGGCACGTGATATGTATCTTTTGCAGCTTTGCAGTGGAATTGATGAAAGTTCAATTGGAGCATGTGCTCAACTTGTGTTTGCACCTATCGACGAATCCTTTGCGGATGACGCCCTTTTGTTGCCTTCTGGTTTTCGTGTTATTCCCTTGGATCCCAAATCAGACGGTCCATCAAGGACATTGGATTTGACATCAACAATTGGATCTAGTAATGCTCGTGCAGCCGGTGAAGGTGATGCAAATGGATACAACCTTAGGTCGGTTCTTACGATCGCATTTCAATTTACCTTTGAGAATCATTTGCGCGACAACGTGGCTGCTATGGCTCGTCAGTATGTGCGTAGTGTTGTGGGATCGGTTCAGAGGGTTGCCATGGCAATCGCTCCCTCTCGGCCAGTTACTCAGCTAGGGTCAAAATCACATCCCGGTTCGCCAGAAGCTCATGCTTTAGCACGATGGATCAGTAGAAGCTACAAGATGCACACTCGTACCGATCTTTTCAGAGTTGAGTCTGCAGCTAGCGATGCGATCTTGAAGCAACTTTGGCAGCATTCAGATGCAATAATGTGCTGTTCTGTTAAAACAAATGCATCTCCGATATTCACTTTTTCAAACCAAGCCGGACTAGACATGCTTGAAACTACTCTGGTTGCTCTTCAAGATATAATGCTCGATAAAGTTCTCGATGAAGCTGGTAGAAAGAATCTTTGCTCTGAGTTCGCTAAGATAATGCAACAGGGTTATGCATATCTGCCAGGAGGGATATGTTTCTCAAGTATGAATAGGTCAGTGTCTTATGAGCAAGCTATTGCATGGAAAGTTCTCAATGATGATGATGCCAATCACTGCATAGCTTTCATGTTCATCAACTGGTCCTTTGTCTGA 2526 0.4398 MALSMHKDINNQMDAGKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTVSASAATTTDNSCDSVVMSGQNQQQNPNQRPQRDANNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPTKVAEILKDRLTWYRDCRCVDVLSIVPTGGGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLNASTGGPPGPSSSNFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLGNDGVEDVTIAVNSSPNKFVGSNYSTMFPTFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKSSPYAVPCARPGGFPSSQVILPLAPTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGIDESSIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPSRTLDLTSTIGSSNARAAGEGDANGYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRPVTQLGSKSHPGSPEAHALARWISRSYKMHTRTDLFRVESAASDAILKQLWQHSDAIMCCSVKTNASPIFTFSNQAGLDMLETTLVALQDIMLDKVLDEAGRKNLCSEFAKIMQQGYAYLPGGICFSSMNRSVSYEQAIAWKVLNDDDANHCIAFMFINWSFV 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03217 841 SMART HOX_1 14 80 IPR001356 GO:0003677
Tsu08g03217 841 Gene3D - 10 83 - -
Tsu08g03217 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 841 IPR044830 GO:0003700
Tsu08g03217 841 MobiDBLite consensus disorder prediction 137 159 - -
Tsu08g03217 841 SMART START_1 166 376 IPR002913 GO:0008289
Tsu08g03217 841 Coils Coil 82 106 - -
Tsu08g03217 841 Pfam START domain 167 374 IPR002913 GO:0008289
Tsu08g03217 841 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Tsu08g03217 841 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Tsu08g03217 841 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Tsu08g03217 841 Gene3D - 192 378 IPR023393 -
Tsu08g03217 841 SUPERFAMILY Bet v1-like 415 648 - -
Tsu08g03217 841 CDD bZIP 69 108 - -
Tsu08g03217 841 CDD homeodomain 17 77 IPR001356 GO:0003677
Tsu08g03217 841 Pfam MEKHLA domain 696 840 IPR013978 -
Tsu08g03217 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 841 - -
Tsu08g03217 841 SUPERFAMILY Bet v1-like 167 378 - -
Tsu08g03217 841 MobiDBLite consensus disorder prediction 137 158 - -
Tsu08g03217 841 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
Tsu08g03217 841 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03217 Tsu-Chr8 49358785 49364096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03217 1 841 Homeobox Transcription Factor Family AT2G34710 77.544 0.0 1366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu08g03217 START 4.3e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03217 K09338 - gmx:100807428 1498.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03217 08 49358785 49364096 Tsu08g03217 08 49358785 49364096 ECH