Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03210 ATGGATCTTGGAAGAGCCGCGTCAGGTAGAAGAAGATTGAAAGATTTATTGCTTCAGAAGGATAATCGTGTTTGTTCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAATATTGGAGTGTttatatgtttaaaatgttGCGGTGTGCACAGAAGCCTTGGTACTCATATTTCAAAGGTTTTATCTGTGACATTGGATGAATGGTCAGATGATGAAGTAGATGCAATGATAGAAGTTGGAGGAAATGCCTCCGCTAATTCAATTTATGAGGCTTATATTCCTGAAGGATATACAAAACCCGGACCAGATGCCACTCCTGAGCAGCGTTCACAGTTTATACGGTCAAAGTATGAGTTGCAAGAATTTTTGAAGCCTAGTTTGCGCATTGTGTCTGGAAAAAGCAATCAATCAAGTTCTTCCGGCAGTTTTATGGATAGTTTTAGAAGCGCTGGTTCACAGAGAATGGAAGGTATGATAGAATTCATTGGAATGTTGAAGGTGAAAGTAATTCAAGGCACAAATTTAGCCATCCGGGATATAAAGTCAAGTGACCCATATGTTGTTTTAAACCTCGGCTCACAGACTGTACAGACAACTGTAGTGAGGAGTAATTTGAATCCAGTCTGGAATGAGGAGCGTATGCTGTCTGTTCCAGAGCATTACGGACAACTGAAATTGAAAGTATATGATTATGACACATTTTCTGCTGATGATATAATGGGAGAAGCGGACATTGATCTTCAGTCACTGATAACATCTGCCATGGCATTTAGAGATCCTGGAATGTATTCAGATATGCAGATCGGAAAATGGTTGAAATCTGACGACAATGCACTTATTGAGGATAGCCCGGTCGAAAtttctgatggtaagattaaaCAAATGATGACAATCAGACTCCAGAATGTTGAATCTGGAGATATAGAGTTAGAACTCGAATGGATTCCTCTTGATCAATAG 966 0.3892 MDLGRAASGRRRLKDLLLQKDNRVCSDCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEVDAMIEVGGNASANSIYEAYIPEGYTKPGPDATPEQRSQFIRSKYELQEFLKPSLRIVSGKSNQSSSSGSFMDSFRSAGSQRMEGMIEFIGMLKVKVIQGTNLAIRDIKSSDPYVVLNLGSQTVQTTVVRSNLNPVWNEERMLSVPEHYGQLKLKVYDYDTFSADDIMGEADIDLQSLITSAMAFRDPGMYSDMQIGKWLKSDDNALIEDSPVEISDGKIKQMMTIRLQNVESGDIELELEWIPLDQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03210 321 Gene3D Arf GTPase activating protein 3 130 IPR038508 -
Tsu08g03210 321 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 321 IPR044518 GO:0005096|GO:0005543
Tsu08g03210 321 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 124 IPR001164 GO:0005096
Tsu08g03210 321 Pfam C2 domain 166 255 IPR000008 -
Tsu08g03210 321 Gene3D C2 domain 163 321 IPR035892 -
Tsu08g03210 321 CDD ArfGap 13 119 - -
Tsu08g03210 321 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Tsu08g03210 321 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Tsu08g03210 321 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Tsu08g03210 321 SMART C2_3c 166 261 IPR000008 -
Tsu08g03210 321 ProSiteProfiles C2 domain profile. 147 263 IPR000008 -
Tsu08g03210 321 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 165 311 IPR035892 -
Tsu08g03210 321 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Tsu08g03210 321 SMART arf_gap_3 10 132 IPR001164 GO:0005096
Tsu08g03210 321 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 3 321 - -
Tsu08g03210 321 CDD C2_ArfGAP 164 308 - -
Tsu08g03210 321 Pfam Putative GTPase activating protein for Arf 11 126 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03210 Tsu-Chr8 49273787 49279309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03210 3 321 C2H2 Transcription Factor Family AT4G21160 71.818 6.00e-179 496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03210 08 49273787 49279309 Tsu08g03210 08 49273787 49279309 ECH