Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03209 ATGGCTCATATTTGTCAATGTCTCAGTCGATTGTCAACTTTCCGGCGAGACTTTCCGGTGACTGTTGCCGGAAACCACCGTAAGACAGGGGAACAGTTTGTGGAGGAAGTAGTTTCACTAGCACATGGTCTTGTCCAGCTTGGAGTCACACCTGGTGATGTTGTAGCCATCTCTGCTTACAACAGTGATTGGTATCTGGAATGGTTATTAGCCATTGCATTTGTTGGAGGAATTGCTGCTCCTTTGAACTATCGTTGGAGTTTTGAAGAGGCAAGGTTAGCTATGAAAGCAGTGAAACCAGTGATGTTAGTGATTGATGAGAGCTGCTATTCATGGTACTTCAAATTCCAACAAAATGATATTCCATCTCTAAAGTGGCATGTTTTGTTGGATTCCCCTTCTTCAGATTTTACAAACAAATCGAACGTGTTGACTCAAGGAATACTTATGAAGCATCTTGTAAAGCCTCTAGAATTGAATTACTCATCGGCACCTGAAGGAGCCGTTATAATATGCTTTACTTCAGGAACTACCGGAAAACCCAAGGGAGTGACAATAAGCCATGAAGCTTTGATCATACAGTCCTTAGCCAAGATTGCCATAGTTGGATATAGCGAAGATGATGTCTATCTTCATACTGCTCCATTATGTCACATTGGTGGCTTGTCATCAGCCATGACCATGCTTATGGTTGGAGGTTGCCACGTATTCATGCCGAAGTTTGATGCAAAATTAGCTGTTAGTGCCATAGAACAATATGCTGTGACATCTTTTATCACAGTTCCTGCAATAATGGCCAGTTTGATTTCTATTGTTAGgcACAAAGAAACATGGAAAGGAGGAGAAACTGTCAAGAAAATACTCAATGGTGGTGGAAGCCTTTCACTTGAGCTTATCAAAGACATTAACATATTCTTCCATAAAGCTAAGCTTATTTCAGCTTATGGGATGACAGAAGCATGCTCTTCACTGACATTCTTGACACTGTATGATCCAATGCAAAAAACCACATACCATCCTTTTCAAACATATGGTGAAGTAGGATCCAATCTCATTCACCAACCGCAAGGTATTTGTGTCGGCAAGGCTGCATCTCATGTAGAATTGAAGGTATGCGTAGATTCCTCTGGCGACATTGGAAGAATTTTAACTAGAGGACCACATTTAATGCTCAAGTATTGGGATCAAACTCTCGCAAACTCGTCAAGTCGGAGCAATGAAGTATGGCTTGACACTGGTGACATTGGATCAATGGACTGTCATGGTAACTTGTGGCTCCTTGGACGTACAAATGGCCGCATCAAGAGTGGTGGAGAGAATGTTTACCCTGAAGAGGTTGAGGCAATTCTACTAGAACATCCAGGGATTGCAAGTGTTGTGATTGTGGGAATCCCAGATGCGTGTTTCACAGAGACGGTAGCAGCATGTATCCAACCACGAGAAAATTGGCAATGGTTAGAGCATTCAACTTCAAATGAAGACAATCACTTATCTAGAAAGAATCTCCAACAATACTGTCTAGAAAATAACTTAAGCAGGTTTAAGATACCAAAGATATTTATAGAATGGAGGAAGCCTTTTCCGGTCACTACCACaggaaaaataagaagagaCCAAGTCAGAAAGGAGCTTATGTCTGAGCTACAAATTTTGCATAGTAATCTTTGA 1668 0.4089 MAHICQCLSRLSTFRRDFPVTVAGNHRKTGEQFVEEVVSLAHGLVQLGVTPGDVVAISAYNSDWYLEWLLAIAFVGGIAAPLNYRWSFEEARLAMKAVKPVMLVIDESCYSWYFKFQQNDIPSLKWHVLLDSPSSDFTNKSNVLTQGILMKHLVKPLELNYSSAPEGAVIICFTSGTTGKPKGVTISHEALIIQSLAKIAIVGYSEDDVYLHTAPLCHIGGLSSAMTMLMVGGCHVFMPKFDAKLAVSAIEQYAVTSFITVPAIMASLISIVRHKETWKGGETVKKILNGGGSLSLELIKDINIFFHKAKLISAYGMTEACSSLTFLTLYDPMQKTTYHPFQTYGEVGSNLIHQPQGICVGKAASHVELKVCVDSSGDIGRILTRGPHLMLKYWDQTLANSSSRSNEVWLDTGDIGSMDCHGNLWLLGRTNGRIKSGGENVYPEEVEAILLEHPGIASVVIVGIPDACFTETVAACIQPRENWQWLEHSTSNEDNHLSRKNLQQYCLENNLSRFKIPKIFIEWRKPFPVTTTGKIRRDQVRKELMSELQILHSNL 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03209 555 Pfam AMP-binding enzyme C-terminal domain 445 534 IPR025110 -
Tsu08g03209 555 Gene3D - 6 430 IPR042099 -
Tsu08g03209 555 PANTHER ACYL-COA SYNTHETASE FAMILY MEMBER 2, MITOCHONDRIAL 3 544 - -
Tsu08g03209 555 ProSitePatterns Putative AMP-binding domain signature. 171 182 IPR020845 -
Tsu08g03209 555 SUPERFAMILY Acetyl-CoA synthetase-like 4 546 - -
Tsu08g03209 555 CDD AFD_class_I 171 536 - -
Tsu08g03209 555 Pfam AMP-binding enzyme 17 436 IPR000873 -
Tsu08g03209 555 Gene3D - 432 548 IPR045851 -
Tsu08g03209 555 PANTHER ACYL-COA SYNTHETASE 3 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03209 Tsu-Chr8 49266255 49270001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03209 40 463 Monolignol Biosynthesis Gene Families AT3G21240 30.505 5.66e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03209 K14760 - gmx:100809925 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03209 08 49266255 49270001 Tsu08g03209 08 49266255 49270001 ECH